Table 2.

The percentage of correct orders (PCO, %) obtained by four algorithms for eight different population sizes (PS), absence and presence of crossover interferences, and two different missing genotype rates (MS, %) for 20 markers on one chromosome

Independence
PS	MS	SERa	UG	NM	IN (50)
50	0	81.58	87.63	71.73	91.42
	10	68.63	75.28	54.00	82.80
100	0	97.40	98.17	89.22	99.25
	10	94.83	92.30	82.90	98.32
150	0	99.58	99.05	93.97	100.00
	10	97.67	96.10	85.17	99.30
200	0	99.85	99.80	97.78	100.00
	10	99.15	98.60	90.48	99.70
250	0	99.90	98.45	97.80	99.95
	10	99.22	99.20	92.92	99.75
300	0	100.00	100.00	98.13	100.00
	10	99.70	99.67	92.30	99.85
350	0	100.00	99.95	98.60	100.00
	10	99.95	99.85	95.08	100.00
400	0	100.00	99.50	99.17	100.00
	10	100.00	99.90	95.90	100.00
Interference
50	0	80.63	78.13	72.13	89.72
	10	71.23	72.42	52.90	80.67
100	0	91.50	89.18	85.88	94.85
	10	85.08	81.25	67.17	89.80
150	0	93.10	88.20	89.22	94.13
	10	92.13	89.60	77.83	94.10
200	0	94.00	89.03	88.75	94.90
	10	92.25	89.35	82.97	94.58
250	0	96.30	90.63	94.50	96.85
	10	95.45	93.15	86.30	96.23
300	0	95.38	93.05	92.55	96.63
	10	92.53	90.83	84.65	93.73
350	0	94.47	91.15	92.22	96.10
	10	94.85	92.90	88.35	95.15
400	0	95.35	92.17	94.15	95.60
	10	96.17	91.63	90.10	96.75

^aSER seriation, UG unidirectional growth, NM neighbor mapping, IN (50) insertion with 50 repetitions