Table 3. Evaluation in 748 MMR mutation carriers of the CRC risk associated with 8q23.3, 11q23.1, 18q21, CYP1A1 and IGF1 variants.
Total sample (N=748) | Males (N=349) | Females (N=399) | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Locus | Genotype | N | CRC cases | Hazard ratioa | 95% CI | Pb | N | CRC Cases | HR | 95% CI | Pb | N | CRC cases | HR | 95% CI | Pb |
8q23.3 | rs16892766 | |||||||||||||||
AA | 641 | 277 | 1 | 290 | 142 | 1 | 351 | 135 | 1 | |||||||
AC | 104 | 50 | 1.184 | 0.866–1.617 | 0.2892 | 57 | 34 | 1.266 | 0.836–1.916 | 0.2656 | 47 | 16 | 1.067 | 0.677–1.680 | 0.7802 | |
CC | 3 | 2 | 0.267 | 0.083–0.861 | 0.0271 | 2 | 1 | 0.460 | 0.301–0.701 | 0.0003 | 1 | 1 | / | / | <0.0001 | |
0.0462 | 0.0002 | <0.0001 | ||||||||||||||
Per allele | 1.032 | 0.778–1.368 | 0.8283 | 1.117 | 0.770–1.621 | 0.5602 | 0.899 | 0.575–1.405 | 0.6397 | |||||||
11q23.1 | rs3802842 | |||||||||||||||
AA | 380 | 167 | 1 | 178 | 90 | 1 | 202 | 77 | 1 | |||||||
AC | 321 | 139 | 0.923 | 0.725–1.176 | 0.5165 | 141 | 71 | 0.844 | 0.611–1.167 | 0.3047 | 180 | 68 | 1.019 | 0.723–1.438 | 0.9125 | |
CC | 47 | 23 | 1.107 | 0.684–1.791 | 0.6793 | 30 | 16 | 1.043 | 0.599–1.815 | 0.8814 | 17 | 7 | 1.222 | 0.543–2.750 | 0.6284 | |
0.6491 | 0.5079 | 0.8891 | ||||||||||||||
Per allele | 0.988 | 0.806–1.210 | 0.9058 | 0.947 | 0.735–1.220 | 0.6740 | 1.052 | 0.778–1.422 | 0.7428 | |||||||
18q21 | Novel 1 | |||||||||||||||
CC | 156 | 72 | 1 | 84 | 45 | 1 | 72 | 27 | 1 | |||||||
CG | 395 | 165 | 0.956 | 0.704–1.296 | 0.7702 | 185 | 87 | 1.021 | 0.675–1.546 | 0.9215 | 210 | 78 | 0.865 | 0.546–1.370 | 0.5359 | |
GG | 197 | 92 | 1.006 | 0.727–1.390 | 0.9729 | 80 | 45 | 1.088 | 0.706–1.677 | 0.7007 | 117 | 47 | 0.903 | 0.564–1.447 | 0.6714 | |
0.9001 | 0.9087 | 0.8249 | ||||||||||||||
Per allele | 1.007 | 0.859–1.181 | 0.9326 | 1.044 | 0.841–1.295 | 0.6962 | 0.964 | 0.765–1.215 | 0.7570 | |||||||
CYP1A1 | rs1048943 | |||||||||||||||
AA | 708 | 313 | 1 | 331 | 168 | 1 | 377 | 145 | 1 | |||||||
AG | 40 | 16 | 1.026 | 0.601–1.752 | 0.9249 | 18 | 9 | 0.930 | 0.444–1.948 | 0.8480 | 22 | 7 | 1.168 | 0.583–2.338 | 0.6619 | |
GG | 0 | 0 | / | / | / | 0 | 0 | / | / | / | 0 | 0 | / | / | / | |
0.9249 | 0.8480 | 0.6619 | ||||||||||||||
Per allele | 1.026 | 0.601–1.752 | 0.9249 | 0.930 | 0.444–1.948 | 0.8480 | ||||||||||
CYP1A1 | rs4646903 | |||||||||||||||
TT | 598 | 265 | 1 | 279 | 143 | 1 | 319 | 122 | 1 | |||||||
TC | 140 | 61 | 1.031 | 0.769–1.382 | 0.8400 | 66 | 32 | 0.909 | 0.601–1.375 | 0.6524 | 74 | 29 | 1.198 | 0.789–1.818 | 0.3956 | |
CC | 10 | 3 | 1.163 | 0.387–3.495 | 0.7882 | 4 | 2 | 3.496 | 1.517–8.057 | 0.0033 | 6 | 1 | 0.507 | 0.071–3.640 | 0.4997 | |
0.9441 | 0.0090 | 0.5434 | ||||||||||||||
Per allele | 1.039 | 0.801–1.347 | 0.7730 | 1.001 | 0.680–1.474 | 0.9948 | 1.079 | 0.746–1.561 | 0.6874 | |||||||
IGF1 | CA repeat | |||||||||||||||
≥18;≥18 | 710 | 1 | 329 | 1 | 381 | 1 | ||||||||||
≥18; ≤17 | 38 | 0.731 | 0.447–1.196 | 0.2127 | 20 | 0.662 | 0.372–1.179 | 0.1611 | 18 | 0.979 | 0.450–2.132 | 0.9579 |
Hazard ratio relative to subjects not carrying the SNP on either allele for each of the five SNPs considered or to subjects with CA repeat length greater than or equal to 18 on both alleles for the IGF1 promoter and obtained from Cox proportional hazard regression stratified on gender (if applicable), mutated MMR gene (MSH2, MLH1, MSH6) and year of birth (<1940, 1940–1949, 1950–1959, 1960–1969, 1970–1979 and ≥1980), and with control for familial aggregation. The per-allele value refers to Cox regression with a trend fitted for number of alleles carrying the SNP (0, 1, 2).
For each of the five SNP variants and each sample (total sample, males, females), the first two P-values refer to separate comparisons of heterozygous and homozygous subjects for the SNPs considered, with subject not presenting the SNP on either allele; the third P-value refers to the overall comparison of heterozygous, homozygous and SNP-free subjects (heterogeneity test); the final P-value refers to the assessment of the trend for the number of alleles carrying the SNP (0, 1, 2). For IGF1 CA repeat length, the P-value refers to the comparison of subjects with CA repeat length less than or equal to 17 on one allele to subjects with CA repeat length greater than or equal to 18 on both alleles. All tests are Wald tests.