Table 2. Alternatively spliced SR genes.
Organism | Genes with AS | Total genes | Fraction |
Glycine max | 17 | 25 | 0.65 |
Populus trichocarpa | 8 | 20 | 0.40 |
Arabidopsis thaliana | 16 | 18 | 0.84 |
Vitis vinifera | 6 | 9 | 0.66 |
Zea mays | 21 | 22 | 0.95 |
Sorghum bicolor | 11 | 19 | 0.55 |
Oryza sativa | 20 | 22 | 0.83 |
Physcomitrella patens | 8 | 10 | 0.62 |
Chlamydomonas reinhardtii | 2 | 5 | 0.29 |
Danio rerio | 12 | 14 | 0.86 |
Xenopus tropicalis | 9 | 11 | 0.82 |
Gallus gallus | 7 | 10 | 0.70 |
Mus musculus | 10 | 11 | 0.91 |
Homo sapiens | 11 | 12 | 0.92 |
Ciona intestinalis | 7 | 8 | 0.88 |
Branchiostoma floridae | 9 | 11 | 0.82 |
Caenorhabditis elegans | 6 | 7 | 0.86 |
Anopeheles gambiae | 5 | 6 | 0.83 |
Drosophila melanogaster | 3 | 7 | 0.43 |
Aedes aegypti | 1 | 6 | 0.17 |
This table contains the non-normalized AS counts from our AS pipeline. Organisms are listed according to their phylogenetic grouping. Though members of the SR45 sub-family were not included in our final gene-tree analyses, we nevertheless analyzed these genes for AS.