Table 1. Quantification of FBF-2 association with FBEa and FBE1–FBE4.
Oligo name | Kd,app(GS) | Kd,app(FP) |
---|---|---|
gld-1 FBEa | 32±1 nM | 11±2 nM |
cki-2 FBE1 | 26±12 nM | 5±1 nM |
cki-2 FBE1 mut | > 500 nM | > 500 nM |
cki-2 FBE2 | > 500 nM | > 500 nM |
cki-2 FBE2 mut | > 500 nM | > 500 nM |
cki-2 FBE3 | 240±8 nM | 114±2 nM |
cki-2 FBE3 mut | NB | >500 nM |
cki-2 FBE4 | 300±40 nM | 95±3 nM |
cki-2 FBE4 mut | NB | >500 nM |
Affinities of FBF-2 to indicated RNA elements as determined by F-EMSA and FP assays. NB, no binding. Kd,app, apparent equilibrium dissociation constant. For oligo sequences, see Supplementary Table S1. |