Table 3. Haplotype Frequencies Distributions of Significant Haplotype Blocks among Cases and Controls.
Haplotype | Candidate Gene Study | Replication Study | ||||||||||||
SNPs | Alleleg | Freq | Chi Sq | P | P h | SNPs | Alleleg | Freq | Chi Sq | P | P h | |||
Case | Control | Case | Control | |||||||||||
SHMT1-CCG | rs2273028 | C/T | 0.364 | 0.299 | 6.69 | 9.71x10-3 | 0.78 | rs2273028 | C/T | 0.339 | 0.312 | 1.434 | 0.23 | 0.96 |
rs11868708 | T/C | rs9909104i | T/C | |||||||||||
rs2273026 | G/A | rs2273026 | G/A | |||||||||||
TCN2-GA | rs5749131 | A/G | 0.042 | 0.085 | 11.12 | 8.54x10-4 | 0.13 | rs5749131 | A/G | 0.063 | 0.06 | 0.094 | 0.76 | 1 |
rs11703570 | A/T | rs2301955j | C/T |
Major alleles given first, minor alleles second.
1000 permutations performed.
r2 = 1 with rs11868708.
r2 = 1 with rs11703570.