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. 2011 Sep 15;6(9):e24757. doi: 10.1371/journal.pone.0024757

Table 3. Haplotype Frequencies Distributions of Significant Haplotype Blocks among Cases and Controls.

Haplotype Candidate Gene Study Replication Study
SNPs Alleleg Freq Chi Sq P P h SNPs Alleleg Freq Chi Sq P P h
Case Control Case Control
SHMT1-CCG rs2273028 C/T 0.364 0.299 6.69 9.71x10-3 0.78 rs2273028 C/T 0.339 0.312 1.434 0.23 0.96
rs11868708 T/C rs9909104i T/C
rs2273026 G/A rs2273026 G/A
TCN2-GA rs5749131 A/G 0.042 0.085 11.12 8.54x10-4 0.13 rs5749131 A/G 0.063 0.06 0.094 0.76 1
rs11703570 A/T rs2301955j C/T
g

Major alleles given first, minor alleles second.

h

1000 permutations performed.

i

r2 = 1 with rs11868708.

j

r2 = 1 with rs11703570.