Table 1. Species composition and abundance of roots within 12 soil cores determined by sequencing DNA barcode loci from the forest dynamics plot on Barro Colorado Island, Panama.
Sampling Location | Above versus below ground abundance | |||||||||||||||
Species ID | A | B | C | D | E | F | G | H | I | J | K | L | sum root mass | Root mass rank | stem abundance rank | Stem basal area rank |
Alseis blackia | 1 | 5 | 2 | 5 | 6 | 1 | 1 | 0.364 | 3 | 8 | 11 | |||||
Arecaceae sp1 | 1 | 0.040 | 14 | |||||||||||||
Beilschmiedia pendula | 3 | 3 | 2 | 1.103 | 2 | 22 | 4 | |||||||||
Bignoniaceae sp1 | 3 | 0.065 | 10 | |||||||||||||
Bignoniaceae sp2 | 1 | 0.001 | 28 | |||||||||||||
Bignoniaceae sp3 | 1 | 0.003 | 25 | |||||||||||||
Brosimum alicastrum | 1 | 2 | 0.040 | 13 | 50 | 3 | ||||||||||
Burseraceae sp1 | 1 | 0.005 | 24 | |||||||||||||
Celastraceae sp1 | 1 | 0.013 | 19 | |||||||||||||
Chrsophyllum sp1 | 2 | 1 | 0.062 | 12 | ||||||||||||
Chrysophyllum sp2 | 1 | 0.118 | 6 | |||||||||||||
Coccoloba sp1 | 1 | 0.001 | 28 | |||||||||||||
Coussarea curvigemmia | 1 | 2 | 1 | 0.219 | 5 | 19 | 65 | |||||||||
Fabaceae sp1 | 1 | 0.001 | 28 | |||||||||||||
Faramea occidentalis | 1 | 0.010 | 20 | 1 | 5 | |||||||||||
Guapira standleya | 1 | 0.002 | 27 | 63 | 13 | |||||||||||
Gustavia superba | 1 | 3 | 0.108 | 7 | 95 | 61 | ||||||||||
Hybanthus prunifolius | 1 | 2 | 0.017 | 18 | 2 | 28 | ||||||||||
Jacaranda copaia | 1 | 0.001 | 28 | 95 | 24 | |||||||||||
Malpighiaceae sp1 | 3 | 0.100 | 8 | |||||||||||||
Pouteria reticulata | 1 | 0.006 | 22 | 50 | 22 | |||||||||||
Protium tenuifolium | 1 | 0.001 | 32 | 20 | 19 | |||||||||||
Quararibea asterolepis | 1 | 1 | 1 | 3 | 5 | 7 | 4 | 1.551 | 1 | 25 | 10 | |||||
Sapindaceae sp1 | 1 | 4 | 0.029 | 16 | ||||||||||||
Tabebuia guayacan | 1 | 0.020 | 17 | 95 | 21 | |||||||||||
Taberemonta arborea | 2 | 0.063 | 11 | 26 | 7 | |||||||||||
Tachigali versicolor | 3 | 0.009 | 21 | 34 | 27 | |||||||||||
Tetragastris pamensis | 1 | 0.005 | 23 | 6 | 8 | |||||||||||
Trichanthera gigantea | 1 | 0.029 | 15 | 130 | 99 | |||||||||||
Trichilia tuberculata | 1 | 1 | 4 | 2 | 0.253 | 4 | 7 | 2 | ||||||||
Ulmaceae sp1 | 1 | 0.003 | 26 | |||||||||||||
Virola sebifera | 2 | 0.078 | 9 | 32 | 16 | |||||||||||
Fragments (N) | 4 | 5 | 10 | 3 | 10 | 12 | 12 | 22 | 16 | 10 | 9 | 7 | ||||
Spp. richness | 4 | 4 | 6 | 3 | 1 | 7 | 4 | 9 | 4 | 4 | 6 | 4 | ||||
Max Depth (cm) | 20 | 20 | 100 | 100 | 20 | 300 | 20 | 100 | 100 | 20 | 20 | 20 | ||||
Total root mass (g) | 2.34 | 1.49 | 0.73 | 6.10 | 2.64 | 1.82 | 1.23 | 3.58 | 4.30 | 1.72 | 2.56 | 5.74 | ||||
% mass sequenced | 0.11 | 0.11 | 0.11 | 0.08 | 0.03 | 0.16 | 0.17 | 0.05 | 0.24 | 0.09 | 0.06 | 0.19 |
Fragments are the number of fragments sequenced per core, spp. richness is the total number of species found from sequencing the core, total root mass is the total mass in the core, % mass sampled is the percent of the total root mass sampled that was successfully sequenced. Root mass rank is the ranking of the species according to the mass of successfully sequenced roots, stem abundance rank is the rank of the species in terms of number of stems in the focal hectare, and basal area rank is the ranking of the species according to basal area.