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. 2011 Sep 19;6(9):e24506. doi: 10.1371/journal.pone.0024506

Table 1. Species composition and abundance of roots within 12 soil cores determined by sequencing DNA barcode loci from the forest dynamics plot on Barro Colorado Island, Panama.

Sampling Location Above versus below ground abundance
Species ID A B C D E F G H I J K L sum root mass Root mass rank stem abundance rank Stem basal area rank
Alseis blackia 1 5 2 5 6 1 1 0.364 3 8 11
Arecaceae sp1 1 0.040 14
Beilschmiedia pendula 3 3 2 1.103 2 22 4
Bignoniaceae sp1 3 0.065 10
Bignoniaceae sp2 1 0.001 28
Bignoniaceae sp3 1 0.003 25
Brosimum alicastrum 1 2 0.040 13 50 3
Burseraceae sp1 1 0.005 24
Celastraceae sp1 1 0.013 19
Chrsophyllum sp1 2 1 0.062 12
Chrysophyllum sp2 1 0.118 6
Coccoloba sp1 1 0.001 28
Coussarea curvigemmia 1 2 1 0.219 5 19 65
Fabaceae sp1 1 0.001 28
Faramea occidentalis 1 0.010 20 1 5
Guapira standleya 1 0.002 27 63 13
Gustavia superba 1 3 0.108 7 95 61
Hybanthus prunifolius 1 2 0.017 18 2 28
Jacaranda copaia 1 0.001 28 95 24
Malpighiaceae sp1 3 0.100 8
Pouteria reticulata 1 0.006 22 50 22
Protium tenuifolium 1 0.001 32 20 19
Quararibea asterolepis 1 1 1 3 5 7 4 1.551 1 25 10
Sapindaceae sp1 1 4 0.029 16
Tabebuia guayacan 1 0.020 17 95 21
Taberemonta arborea 2 0.063 11 26 7
Tachigali versicolor 3 0.009 21 34 27
Tetragastris pamensis 1 0.005 23 6 8
Trichanthera gigantea 1 0.029 15 130 99
Trichilia tuberculata 1 1 4 2 0.253 4 7 2
Ulmaceae sp1 1 0.003 26
Virola sebifera 2 0.078 9 32 16
Fragments (N) 4 5 10 3 10 12 12 22 16 10 9 7
Spp. richness 4 4 6 3 1 7 4 9 4 4 6 4
Max Depth (cm) 20 20 100 100 20 300 20 100 100 20 20 20
Total root mass (g) 2.34 1.49 0.73 6.10 2.64 1.82 1.23 3.58 4.30 1.72 2.56 5.74
% mass sequenced 0.11 0.11 0.11 0.08 0.03 0.16 0.17 0.05 0.24 0.09 0.06 0.19

Fragments are the number of fragments sequenced per core, spp. richness is the total number of species found from sequencing the core, total root mass is the total mass in the core, % mass sampled is the percent of the total root mass sampled that was successfully sequenced. Root mass rank is the ranking of the species according to the mass of successfully sequenced roots, stem abundance rank is the rank of the species in terms of number of stems in the focal hectare, and basal area rank is the ranking of the species according to basal area.