Table 1. Read numbers and L2/D4 ratios of protein-encoding cDNA associated with light-stimulated growth.
| Name | Locus tag | Size (aa) |
Read number |
L2/D4 ratio | q-Value | ||
|---|---|---|---|---|---|---|---|
| D2 | L2 | D4 | |||||
| Opsin | |||||||
| Proteorhodopsin | MED134_07119 | 247 | 1 | 33 | 5 | 3.92 | 0.0129 |
| Retinal biosynthetic enzymes | |||||||
| Isopentenyl-diphosphate -isomerase (idi) | MED134_07374 | 172 | 17 | 36 | 11 | 1.94 | 0.1568 |
| Farnesyl-diphosphate synthase (ispA) | MED134_01800 | 325 | 27 | 30 | 21 | 0.85 | 0.7416 |
| Geranylgeranyl pyrophosphate synthase (crtE) | MED134_07466 | 324 | 53 | 77 | 23 | 1.99 | 0.0160 |
| Phytoene synthetase (crtB) | MED134_13071 | 279 | 20 | 34 | 8 | 2.53 | 0.0660 |
| Phytoene dehydrogenase (crtI) | MED134_13076 | 486 | 37 | 86 | 20 | 2.56 | 0.0005 |
| Lycopene cyclase (crtY) | MED134_08681 | 403 | 10 | 10 | 4 | 1.49 | 0.7585 |
| 15,15′-b-carotene dioxygenase (blh) | MED134_07114 | 287 | 2 | 4 | 1 | 2.38 | 0.8027 |
| Transcriptional regulator, MerR family | MED134_13081 | 309 | 9 | 22 | 7 | 1.87 | 0.3648 |
| Transporters | |||||||
| Na+/alanine and glycine symporter | MED134_02355 | 561 | 90 | 84 | 27 | 1.85 | 0.0241 |
| Na+/alanine and glycine symporter | MED134_14567 | 509 | 64 | 52 | 13 | 2.38 | 0.0243 |
| Na+/phosphate symporter | MED134_11180 | 745 | 81 | 64 | 15 | 2.54 | 0.0049 |
| Electron transport chain | |||||||
| Na+-translocating NADH quinone oxidoreductase (nqrA) | MED134_00295 | 448 | 713 | 1308 | 518 | 1.50 | <0.0001 |
| Na+-translocating NADH quinone oxidoreductase (nqrB) | MED134_00300 | 400 | 406 | 753 | 268 | 1.67 | <0.0001 |
| Na+-translocating NADH quinone oxidoreductase (nqrC) | MED134_00305 | 248 | 101 | 181 | 56 | 1.92 | 0.0001 |
| Na+-translocating NADH quinone oxidoreductase (nqrD) | MED134_00310 | 215 | 93 | 147 | 34 | 2.57 | <0.0001 |
| Na+-translocating NADH quinone oxidoreductase (nqrE) | MED134_00315 | 228 | 73 | 97 | 38 | 1.52 | 0.1115 |
| Na+-translocating NADH quinone oxidoreductase (nqrF) | MED134_00320 | 435 | 250 | 485 | 165 | 1.75 | <0.0001 |
Abbreviation: cDNA, complementary DNA. Statistical significance between light and dark cultures was measured based on q-value (false-discovery rate method). The features with q-values ⩽0.05 are significant (Storey and Tibshirani, 2003), which are in bold.