Table 1.
Tumor source |
Peptide | Variable Regiona |
Subfamilyb | start positionc |
Sequenced | Length | Predictive bindinge |
Mean Fluorescencef |
shared tumorsg |
---|---|---|---|---|---|---|---|---|---|
U266 Myeloma | P19 | FR1 | IGLV1 | 5 | TQPPSTSET | 9 | 0.76 | 0.40 | 1/90 |
P20 | FR2 | IGLV1 | 39 | HLPGKAPKL | 9 | 0.73 | 0.26 | 0/90 | |
P21 | FR3 | IGLV1 | 71 | SASLAISGL | 9 | 0.68 | 0.15 | 12/90 | |
P23 | CDR1 | IGLV1 | 26 | TSNIGSNSV | 9 | 0.45 | 0.24 | 0/90 | |
P25 | CDR1 | IGLV1 | 32 | NSVNWYQHL | 9 | 0.21 | 1.29 | 1/90 | |
P26 | CDR3 | IGLV1 | 90 | ASWDDRLNGL | 10 | 10.92 | 0.26 | 0/90 | |
P27 | CDR1 | IGLV1 | 9 | STSETPGQGV | 10 | 3.96 | 0.53 | 0/90 | |
P28 | FR1 | IGLV1 | 17 | GVTISCSGST | 10 | 0.09 | 0.15 | 0/90 | |
P29 | FR1 | IGLV1 | 11 | SETPGQGVTI | 10 | 0.20 | 0.45 | 0/90 | |
Human CLL1 | L50 | FR1 | IGLV2 | 29 | SVSGSPGQSI | 10 | 0.913 | 0.07 | 7/90 |
Human FL1 | L53 | FR1 | IGLV1 | 28 | SASATPGQRV | 10 | 0.96 | 0.07 | 2/90 |
Human FL2 | L54 | FR1 | IGLV4 | 29 | SASASLGASV | 10 | 0.96 | 0.06 | 2/90 |
Human FL3 | L61 | FR1 | IGLV1 | 16 | KVTISCSGST | 10 | 0.29 | 0.06 | 2/90 |
Human PL1 | K18 | CDR2 | IGKV3 | 50 | LIYGTSSRA | 9 | 3.7 | 0.52 | 1/123 |
Lambda | 27/90 | ||||||||
kappa | 1/123 |
Analysis and blast by IMGT website (http://imgt.cines.fr/IMGT_vquest/vquest?livret=0&Option=humanIg)
Somatically mutated amino acids are bolded
Estimate of half-time of disassociation and calculated score in arbitrary units.
Mean fluorescence Index = (Mean fluorescence with peptide-mean fluorescence without peptide)/(mean fluorescence without peptide).
Individual peptide sequences were compared with Ig V-region sequences available from either 90 FL patients with lambda or 123 patients with kappa L-chain isotype, respectively.
CLL, chronic lymphocytic leukemia; FL, follicular lymphoma; PL, plasma cell leukemia