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. Author manuscript; available in PMC: 2012 Sep 15.
Published in final edited form as: Clin Cancer Res. 2011 Aug 3;17(18):5945–5952. doi: 10.1158/1078-0432.CCR-11-0970

Table 1.

Characteristics of VL T-cell epitopes from U266 and primary B-cell tumors

Tumor
source
Peptide Variable
Regiona
Subfamilyb start
positionc
Sequenced Length Predictive
bindinge
Mean
Fluorescencef
shared
tumorsg
U266 Myeloma P19 FR1 IGLV1 5 TQPPSTSET 9 0.76 0.40 1/90
P20 FR2 IGLV1 39 HLPGKAPKL 9 0.73 0.26 0/90
P21 FR3 IGLV1 71 SASLAISGL 9 0.68 0.15 12/90
P23 CDR1 IGLV1 26 TSNIGSNSV 9 0.45 0.24 0/90
P25 CDR1 IGLV1 32 NSVNWYQHL 9 0.21 1.29 1/90
P26 CDR3 IGLV1 90 ASWDDRLNGL 10 10.92 0.26 0/90
P27 CDR1 IGLV1 9 STSETPGQGV 10 3.96 0.53 0/90
P28 FR1 IGLV1 17 GVTISCSGST 10 0.09 0.15 0/90
P29 FR1 IGLV1 11 SETPGQGVTI 10 0.20 0.45 0/90
Human CLL1 L50 FR1 IGLV2 29 SVSGSPGQSI 10 0.913 0.07 7/90
Human FL1 L53 FR1 IGLV1 28 SASATPGQRV 10 0.96 0.07 2/90
Human FL2 L54 FR1 IGLV4 29 SASASLGASV 10 0.96 0.06 2/90
Human FL3 L61 FR1 IGLV1 16 KVTISCSGST 10 0.29 0.06 2/90
Human PL1 K18 CDR2 IGKV3 50 LIYGTSSRA 9 3.7 0.52 1/123
Lambda 27/90
kappa 1/123
a,b,c

Analysis and blast by IMGT website (http://imgt.cines.fr/IMGT_vquest/vquest?livret=0&Option=humanIg)

d

Somatically mutated amino acids are bolded

e

Estimate of half-time of disassociation and calculated score in arbitrary units.

f

Mean fluorescence Index = (Mean fluorescence with peptide-mean fluorescence without peptide)/(mean fluorescence without peptide).

g

Individual peptide sequences were compared with Ig V-region sequences available from either 90 FL patients with lambda or 123 patients with kappa L-chain isotype, respectively.

CLL, chronic lymphocytic leukemia; FL, follicular lymphoma; PL, plasma cell leukemia