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. 2011 Sep 21;101(6):1335–1344. doi: 10.1016/j.bpj.2011.08.012

Table 1.

Thirty elementary reaction steps

Reaction No. Reaction step Probability of reaction
1 G + PN → [a1] GPN w1 = a1 + G × PN
2 GPN → [d1] G + PN w2 = d1 × GPN
3 GPN + PN → [a1] GPN2 w3 = a2 × GPN × PN
4 GPN2 → [d2] GPN + PN w4 = d2 × GPN2
5 GPN2 + PN → [a3] GPN3 w5 = a3 × GPN2 × PN
6 GPN3 → [d3] GPN2 + PN w6 = d3 × GPN3
7 GPN3 + PN → [a4] GPN4 w7 = a4 × GPN3 × PN
8 GPN4 → [d4] GPN3 + PN w8 = d4 × GPN4
9 [G, GPN, GPN2, GPN3] → [vs] Mp w9 = vs × (G + GPN + GPN2 +GPN3)
10 Mp + Em → [km1] Cm w10 = km1 × Mp × Em
11 Cm → [km2] Mp + Em w11 = km2 × Cm
12 Cm → [km3] Em w12 = km3 × Mp
13 Mp → [ks] Mp + P0 w13 = ks × C1
14 P0 + E1 → [k11] C1 w14 = k11 × P0 × E1
15 C1 → [k12] P0 + E1 w15 = k12 × C1
16 C1 → [k13] P1 + E1 w16 = k13 × C1
17 P1 + E2 → [k21] C2 w17 = k21 × P1 × E2
18 C2 → [k22] P1 + E2 w18 = k22 × C2
19 C2 → [k32] P0 + E2 w19 = k23 × C2
20 P1 + E3 → [k31] C3 w20 = k31 × P1 × E3
21 C3 → [k32] P1 + E3 w21 = k32 × C3
22 C3 → [k33] P2 + E3 w22 = k33 × C3
23 P2 + E4 → [k41] C4 w23 = k41 × P2 × E4
24 C4 → [k43] P1 + E4 w24 = k42 × C4
25 C4 → [k43] P1 + E4 w25 = k43 × C4
26 P2 + Ed → [kd1] Cd w26 = kd1 × P2 × Ed
27 Cd → [kd2] P2 + Ed w27 = kd2 × Cd
28 Cd → [kd3] Ed w28 = kd3 × Cd
29 P2→ [k1] PN w29 = k1 × P2
30 PN → [k2] P2 w30 = k2 × PN