Table 2. Primer pairs used in this survey.
Sequence/reference | T | a.r. | a.p. | |
---|---|---|---|---|
5S-Univ-F | Vierna et al. (2009) | 50 °C | 5S | 13–32 |
5S-Univ-R | Vierna et al. (2009) | 50 °C | 5S | 36–55 |
5S-U1-F | 5′ GTCTACGGCCATATCACGTT | 61 °C | 5S | 1–20 |
5S-U1-R | 5′ GTTAGCGCGAACGCAGVC | 61 °C | U1 | 142–159 |
U1-5S-F | 5′ VCTGCGTTCGCGCTAVCC | 65 °C | U1 | 143–160 |
U1-5S-R | 5′ GGTATTCCCAGGCGGTCAC | 65 °C | 5S | 87–105 |
U1-U1-F | 5′ GCAATGGAAGGGCCTCCTCCT | 61 °C | U1 | 49–69 |
U1-U1-R | 5′ TTCGGTTGGGCTGATGCCTG | 61 °C | U1 | 72–91 |
Abbreviations: a.p., annealing position within each RNA coding region; a.r., annealing region; T, annealing temperature; U1, U1 small nuclear RNA coding region; 5S, 5S ribosomal RNA coding region.