Table 3. Intergenic spacer groups and supergroups.
NTS group | Species | Clade | N | Length | Mean P-distance |
---|---|---|---|---|---|
Supergroup I | 72 | 286–329 | 0.135±0.010 | ||
α | Ensis directus | A | 41 | 321–329 | 0.011±0.003 |
β | Ensis macha | A | 18 | 314–318 | 0.019±0.004 |
ζ | Ensis magnus, E. siliqua, E. ensis, E. goreensis | E | 13 | 286–315 | 0.042±0.006 |
Supergroup II | 28 | 407–965 | 0.240±0.012 | ||
γ | Ensis directus | A | 11 | 444–654 | 0.023±0.004 |
δ | Ensis directus | A | 4 | 407 | 0.002±0.002 |
η* | Ensis magnus, E. siliqua, E. ensis, E. minor (Chenu) | E | 9 | 893–965 | 0.046±0.004 |
θ* | Ensis directus, E. macha, E. minor (Dall) | A | 4 | 926–960 | 0.127±0.008 |
Supergroup III | 14 | 405–620 | 0.141±0.009 | ||
ɛ 1 | Ensis macha | A | 6 | 603 | 0.011±0.003 |
ɛ 2 | Ensis macha | A | 5 | 618–620 | 0.004±0.002 |
ξ* | Ensiculus cultellus | 3 | 405 | 0.010±0.004 | |
Supergroup IV | 8 | 355–550 | 0.241±0.013 | ||
μ | Pharus legumen | 3 | 548–550 | 0.005±0.002 | |
o* | Siliqua patula | 2 | 355 | 0 | |
λ* | Pharus legumen | 3 | 419–420 | 0 | |
Supergroup V | |||||
ι* | Ensis macha | A | 1 | 776 | |
Supergroup VI | 2 | 209–369 | 0.077±0.018 | ||
π* | Siliqua patula | 1 | 369 | ||
ρ* | Siliqua patula | 1 | 209 | ||
Supergroup VII | 2 | 283–332 | 0.366±0.029 | ||
κ | Pharus legumen | 1 | 332 | ||
ν* | Ensiculus cultellus | 1 | 283 | ||
IGS group |
Species |
|
n |
Length |
Mean P-distance |
Supergroup Ensis–Ensiculus | 15 | 222–422 | 0.203±0.015 | ||
Ensis spp. | Ensis directus, E. macha, E. minor (Dall, 1899) | 13 | 225–231 | 0.177±0.014 | |
Ensis magnus, E. siliqua, E. ensis, E. minor (Chenu, 1843) | |||||
Ensiculus cultellus | Ensiculus cultellus | 2 | 421–422 | 0.002±0.002 | |
Supergroup Pharus–Siliqua | 5 | 236–342 | 0.193±0.017 | ||
Siliqua patula | Siliqua patula | 2 | 236 | 0.064±0.015 | |
Pharus legumen | Pharus legumen | 3 | 342 | 0.007±0.004 |
Abbreviations: A, American clade; E, European clade (Ensis phylogenetic clades according to Vierna et al. (unpublished data)); IGS, intergenic spacer (downstream a U1 small nuclear RNA coding region); n, sample size, NTS, nontranscribed spacer (intergenic spacer downstream a 5S ribosomal RNA coding region). Asterisks (*) indicate nontranscribed spacers linked to U1 small nuclear DNA;