Table 2. Profile summaries for selected CBMs containing aromatic residues conserved to known ligand-binding residues.
Family | UniProt | Protein | Position | Organism | HARs | Template(s) | Identity | Z score |
CBM4 | Q59218 | Arabinosidase | 59–197 | Bacteroides ovatus | W76, Y79, F116, F117 | 2zex | 26.9 | –0.463 |
CBM6 | P77847 | β-1,4-mannanase | 453–575 | Caldocellum saccharolyticum | W461, Y472, Y477, F481, Y499, Y514, W520, F538, Y564 | 1w9s–1uxx | 27.9 | –0.454 |
CBM32 | Q8IK83 | LCCL domain-containing protein | 305–420 | Plasmodium falciparum | Y307, Y329, W330, F335, Y339, F380 | 2j1v–2j7m | 26.7 | –0.510 |
CBM53 | A4F2M4 | Starch synthase III | 280–365 | Phaseolus vulgaris | F306, W309, F314, W327, F346, Y352 | 2v8l–2c3w | 24.3 | –0.367 |
The italics denote aromatic residues conserved to reported ligand-binding residues in corresponding template(s). No experimental data concerning their ligand-binding abilities is available for the unannotated HARs. The used template structures are 2zex [44], 1w9s [45], 1uxx [46], 2j1v [24], 2j7m [47] and 2v8l [48], 2c3w [49].