Table 1. Short Nucleotide Polymorphisms (SNPs) analysed in the study.
region | rs# | gene name | localization | Reference Allele | Rare Allel |
5p15.33 | rs2736100 | telomerase reverse transcriptase (TERT) | intronic | T | G |
rs2736098 | telomerase reverse transcriptase (TERT) | A [Ala] ⇒ A [Ala] | G | A | |
rs402710 | CLPTM1-like (CLPTM1L) | intronic | C** | T | |
5p14 | rs17374971* | not located in gene | ---- | T | C |
5q12.3 | rs1387630 | not located in gene | ---- | T | C |
6p22.1 | rs4324798 | not located in gene | ---- | G | A |
6p21.3 | rs3131379 | mutS homolog 5 (E. coli) (MSH5) | intronic | C | T |
6q23 | rs1545092 | not located in gene | ---- | T | C |
6q24.2 | rs4286803 | not located in gene | ---- | T | C |
6q24.3 | rs1007475 | not located in gene | ---- | A | C |
6q25 | rs671330 | not located in gene | ---- | G | A |
6q27 | rs7452888 | not located in gene | ---- | A | G |
15q25 | rs8034191 | aminoglycoside phosphotransferase domain containing 1 (AGPHD1) | intronic | T | C |
rs16969968 | cholinergic receptor, nicotinic, alpha 5 (CHRNA5) | D [Asp] ⇒ N [Asn] | G | A |
*not in Hardy Weinberg Equilibrium in one of control groups, excluded from further analysis.
**Note that in other studies minor allele (T) was the reference allele.