Skip to main content
. 2011 Sep 22;6(9):e25057. doi: 10.1371/journal.pone.0025057

Table 1. Short Nucleotide Polymorphisms (SNPs) analysed in the study.

region rs# gene name localization Reference Allele Rare Allel
5p15.33 rs2736100 telomerase reverse transcriptase (TERT) intronic T G
rs2736098 telomerase reverse transcriptase (TERT) A [Ala] ⇒ A [Ala] G A
rs402710 CLPTM1-like (CLPTM1L) intronic C** T
5p14 rs17374971* not located in gene ---- T C
5q12.3 rs1387630 not located in gene ---- T C
6p22.1 rs4324798 not located in gene ---- G A
6p21.3 rs3131379 mutS homolog 5 (E. coli) (MSH5) intronic C T
6q23 rs1545092 not located in gene ---- T C
6q24.2 rs4286803 not located in gene ---- T C
6q24.3 rs1007475 not located in gene ---- A C
6q25 rs671330 not located in gene ---- G A
6q27 rs7452888 not located in gene ---- A G
15q25 rs8034191 aminoglycoside phosphotransferase domain containing 1 (AGPHD1) intronic T C
rs16969968 cholinergic receptor, nicotinic, alpha 5 (CHRNA5) D [Asp] ⇒ N [Asn] G A

*not in Hardy Weinberg Equilibrium in one of control groups, excluded from further analysis.

**Note that in other studies minor allele (T) was the reference allele.