Table 1. Results of cytogenetic and molecular analysis in 63 study patients.
Origin of | Age at diagnosis | Conventional | Array CGH analysis | ||||
---|---|---|---|---|---|---|---|
Patient ID | deletion/heredity | of Rb in months | Rb Phenotype | Cytogenetic analysis | Proximal breakpoint | Distal breakpoint | Location and size of deletion |
Patients with a small deletion | |||||||
3 (father of 5,6) | Paternal, n.k. | n.k. | Unilateral retinal scar | 46, XY | 45362825–48363232a | 48696986–48697628a | 13q14.12q14.2, 3.33 Mb |
5 (son of 3) | Paternal, inherited | 18 | Bilateral | 46,XY,del(13)(q14.2q14.2) | n.p. | n.p. | 13q14.12q14.2, 3.33 Mb |
6 (son of 3) | Paternal, inherited | 1 | Unilateral | n.p. | n.p. | n.p. | 13q14.12q14.2, 3.33 Mb |
15 | Maternal, de novo | 8 | Bilateral | 46, XX | 47709742–47709919a | 48590296–48596709a | 13q14.2, 0.89 Mb |
17 | Maternal, n.k. | 24 | Bilateral | 46, XX | 47946955–47948489a | 47956038–47956506a | 13q14.2, 7.99 kb |
19 | Paternal, de novo | 5 | Bilateral | 46, XY | 46405919–46420133a | 49151941–49151998a | 13q14.2q14.3, 2.75 Mb |
21 | Maternal, de novo | 11 | Bilateral | 46, XY | 47672542–47681006a | 47912363–47912496a | 13q13.2, 0.24 Mb |
26 | Paternal, de novo | n.r. | Bilateral | n.p. | 47635376–47636676a | 47808181–47812029a | 13q14.2, 0.18 Mb |
34 | Paternal, de novo | 14 | Bilateral | n.p. | 47915282–47917513a | 48068498–48071869a | 13q14.2, 0.15 Mb |
35 | Paternal, de novo | 9 | Bilateral | 46, XY | 47743725–47746919a | 50149499–50149928a | 13q14.2q14.3, 2.41 Mb |
36 | Paternal, de novo | 18 | Unilateral | n.p. | 46963616–46963771a | 48367780–48368525a | 13q14.2, 1.41 Mb |
38 (nephew of 39) | Maternal, inherited | 5 | Unilateral | 46,XY,del(13)(q14.2q14.2) | 47485354–47485997a | 48659232–48659286a | 13q14.2, 1.17 Mb |
39 (aunt of 38) | Paternal, inherited | n.k. | Unilateral retinal scar | 46,XX,del(13)(q14.2q14.2) | n.p. | n.p. | 13q14.2, 1.17 Mb |
47 | Maternal, de novo | 2 | Bilateral | 46, XX | 47710100–47710396a | 47849823–47851046a | 13q14.2, 0.14 Mb |
49 | n.k. | n.r. | Bilateral | 46, XX | 47772350–47772827a | 47776329–47776560a | 13q14.2, 4.21 kb |
50 | Maternal, inherited | n.r. | Bilateral | n.p. | 47888152–47894725a | 47996364–47996791a | 13q14.2, 0.11 Mb |
52 | Paternal, de novo | n.r. | Bilateral | 46, XX | 47072184–47073478a | 49029921–49032229a | 13q14.2q14.3, 1.96 Mb |
55 | Maternal, inherited | n.r. | Bilateral | n.p. | 47272350–47272781a | 48734057–48735946a | 13q14.2, 1.46 Mb |
57 | Paternal, de novo | 16 | Unilateral | 46, XX | 46054012–46054336a | 51272913–51275120a | 13q14.2q14.3, 5.22 Mb |
60 (mother of 63) | Paternal, inherited | — | No Rb | 46, XX | 47143683–47143754a | 481545510–48154565a | 13q14.2, 1.01 Mb |
63 (son of 60) | Maternal, inherited | n.r. | Unilateral | 46, XY | n.p. | n.p. | 13q14.2, 1.01 Mb |
62 (son of 74) | Paternal, inherited | 8 | Bilateral | 46, XY | 46379866–46379925a | 48256793–48258148a | 13q14.2, 1.88 Mb |
74 (father of 62) | n.k. | n.r. | Bilateral | n.p. | n.p. | n.p. | 13q14.2, 1.88 Mb |
64 | Paternal, de novo | 10 | Bilateral | 46, XY | n.p. | n.p. | |
70 (daughter of 73) | Maternal, inherited | 42 | Unilateral | 46,XX,del(13)(q14.2q14.2) | 46317606a | 48052536a | 13q14.2, 1.74 Mb |
73 (mother of 70) | Paternal, n.k. | 30 | Unilateral | 46, XX | n.p. | n.p. | 13q14.2, 1.74 Mb |
82 | Paternal, de novo | 9 | Bilateral | 46, XX | n.p. | n.p. | |
Patients with a medium deletion | |||||||
9 | Maternal, de novo | 32 | Bilateral | 46,XY,del(13)(q14.2q21.2) | 40733729–40790137b | 60179935–60193507b | 13q14.11q21.2, 19.46 Mb |
10 | Paternal, de novo | 15 | Unilateral | 46,XY,del(13)(q14q21.1) | 43497450–43497509a | 59492754–59502019b | 13q14.11q21.2, 16.01 Mb |
12 | Maternal, de novo | 30 | Bilateral | 46,XX,del(13)(q13q14.2) | 43346651–43346827a | 53285970–53286216a | 13q14.11q21.1, 9.94 Mb |
13 | Maternal, de novo | 5 | Bilateral | 46,XX,del(13)(q12.3q14.3) | 32292404–32318179b | 49897351–49937528b | 13q13.1q14.3, 17.65 Mb |
14 | Maternal, de novo | 5 | Unilateral | 46,XX,del(13)(q14q14) | 42337828–42348574a | 55546169–55564116b | 13q14.11q21.1, 13.23 Mb |
18 | Maternal, de novo | 4 | Unilateral | 46,XY,del(13)(q14.1q14.2) | 42337769–42348630a | 55034743–55044198b | 13q14.11q21.1, 12.71 Mb |
40 | Paternal, de novo | 3 | Bilateral | 46,XY | 43386853–43388686a | 53749602–53764680a | 13q14.11q21.1, 10.38 Mb |
41 | Paternal, de novo | 18 | Unilateral | 46,XY,del(13)(q13q14.3) | 36576884–36621396b | 48717057–48717116a | 13q13.3q14.2, 12.14 Mb |
42 (daughter of 43) | Paternal, inherited | 2 | Bilateral | 46,XX,del(13)(q14q14) | 41390788–41398008a | 48224780–48229293a | 13q14.11q14.2, 6.84 Mb |
43 (father of 42) | Paternal. n.k. | 24 | Unilateral | 46,XY,del(14)(q14.2q14.2) | n.p. | n.p. | 13q14.11q14.2, 6.84 Mb |
45 | Paternal, de novo | 15 | Bilateral | 46,XY,del(13(q14.1q14.2) | 40667660–40732744b | 49535641–49535700a | 13q14.11q14.3, 8.87 Mb |
51 | Paternal, de novo | 18 | Bilateral | 46,XY,del(13)(q14.1q14.3) | 41516365–41516844a | 48840695–48841046a | 13q14.11q14.2, 7.32 Mb |
56 | Paternal, n.k. | n.r. | Bilateral | n.p. | 47936652–47937062a | 63956349–63978332b | 13q14.2q21.31, 16.04 Mb |
58 | Paternal, de novo | 12 | Bilateral | 46,XY,del(13)(q14.1q14.2) | 40370025–40431052b | 47875264–47875323a | 13q14.11q14.2, 7.51 Mb |
61 | Paternal, de novo | 6 | Bilateral | 46,XX,del(13)(q14q21.1) | n.p. | n.p. | |
68 | Paternal, de novo | 2 | Bilateral | 46,XX,del(13)(q12.3q14.3) | 37071383–37093430b | 53807548–53854488b | 13q13.3q21.1, 16.78Mb |
Patients with a large deletion | |||||||
4 | Paternal, n.k. | 8 | Bilateral | n.p. | 39671015c | 73097233c | 13q14.11q22.1, 33.43 Mb |
7 | Paternal, de novo | 17 | Bilateral | 46,XX,del(13)(q12.3q21) | 37466693–37501000b | 65918879–65948122b | 13q13.3q21.32, 28.48 Mb |
8 | Paternal, de novo | 3 | Bilateral | 46;XY,del(13)(q14q22) | n.p. | n.p. | |
11 | Paternal, de novo | 1 | Bilateral | 46,XY,del(13)(q12.3q22.1) | n.p. | n.p. | |
16 | Paternal, de novo | 4 | Unilateral | 46,XX,del(13)(q12.3q14.3) | 29036036–29045596b | 52932732–52983296b | 13q12.3q21.1, 23.95 Mb |
20 | Paternal, de novo | 1 | Bilateral | 46,XX,del(13)(q14.11q31.2) | n.p. | n.p. | |
22 | Maternal, de novo | 10 | Bilateral | 46,XX,del(13)(q14q21) | 42331613–42359229b | 65608944–65621171b | 13q14.11q21.32, 23.29 Mb |
24 | Maternal, de novo | 9 | Bilateral | 46,XX,del(13)(q14.11q22) | n.p. | n.p. | |
25 | Paternal, de novo | n.r. | Bilateral | 46,XX,del(13)(q14.1q22) | n.p. | n.p. | |
27 | Paternal, de novo | n.r. | Bilateral | 46,XY,del(13)(q12.3q21.2) | n.p. | n.p. | |
48 | Paternal, de novo | 14 | Bilateral | 46,XY,del(13)(q12q21.32) | n.p. | n.p. | |
54 | Paternal, de novo | 9 | Bilateral | 46,XY,del(13)(q13.1q21.1) | 33775711–33790664b | 54656139–54662257b | 13q13.2q21.1, 20.88 Mb |
65 | Paternal, de novo | 6 | Bilateral | 46,XX,del(13)(q13q21.1) | n.p. | n.p. | |
66 (mother of 67) | Paternal, de novo | 10 | Bilateral | 46,XX,del(13)(q12.3-21.1) | n.p. | n.p. | |
67 (son of 66) | Maternal, inherited | 8 | Unilateral | 46,XY,del(13)(q12.3-21.1) | n.p. | n.p. | |
71 | Paternal, de novo | 18 | Unilateral | 46,XX,del(13)(q14.1q21.3) | n.p. | n.p. | |
72 | Paternal, de novo | 84 | Unilateral | 46,XX,del(13)(q14.1q22) | n.p. | n.p. | |
76 | Paternal, de novo | 3 | Unilateral | 46,XY,del(13)(q12q21) | n.p. | n.p. | |
77 | Paternal, de novo | 10 | Unilateral | 46,XX,del13(q14q22) | n.p. | n.p. | |
81 | Paternal, de novo | 22 | Bilateral | 46,XY(13)(q13.3q31.2) | n.p. | n.p. |
Abbreviation: n.k., not known; n.p., not performed.
Custom made high-resolution oligonucleotide CGH Microarray Kit 4 × 44K Agilent Technologies.
Affymetrix 250K Nsp Array.
Agilent Human genome CGH Microarray Kit 244K (based on NCBI Build 36.1 March 2006, hg 18).