Table 2. Classification of mutations.
Varianta | Mutationa | Severity groupc | SIFTd | Exon | Type, location | Functional effecte | Allele frequencies |
---|---|---|---|---|---|---|---|
p.G591D | c.1772G>A | Moderate | 0.42 | 5 | Missense, Cu 6 | Extensive mislocalization | 1% (1/70) |
p.R616Q | c.1847G>A | Moderate | 0.07 | 5 | Missense | 1% (1/70 | |
Ex5-6delb | c.1708-?_1946+?del | Severe | — | 5–6 | Deletion, Cu 6 | 1% (1/70) | |
p.D642H | c.1924G>C | Moderate | 0.05 | 6 | Missense, Cu6/TM1 | 3% (2/70) | |
p.I669I-fs | c.2007_2013delATATGCT | Moderate | — | 7 | Deletion, TM1 | 6% (4/70) | |
p.M769H-fs | c.2304insC | Severe | — | 8 | Insertion, TM4 | 1% (1/70) | |
p.M769V | c.2305A>G | Moderate | 0.52 | 8 | Missense, TM4 | Normal rescue ΔCcc2 yeast. Normal cellular localization | 3% (2/70) |
p.R778 L | c.2333G>T | Severe | 0.01 | 8 | Missense, TM4 | Reduced rescue ΔCcc2 yeast. Extensive mislocalization | 3% (2/70) |
p.W779X | c.2336G>A | Severe | 0.00 | 8 | Non-sense, TM4 | 12% (8/70) | |
p.G943D | c.2828G>A | Severe | 0.02 | 12 | Missense, TM5 | 4% (3/70) | |
p.T977M | c.2930C>T | Severe | 0.00 | 13 | Missense, TM6 | No rescue ΔCcc2 yeast | 1% (1/70) |
p.A1003T | c.3007G>A | Moderate | 0.00 | 13 | Missense, TM6 | 1% (1/70) | |
p.I1021 Kb | c.3062T>A | Severe | 0.00 | 14 | Missense, ATP | 3% (2/70) | |
p.R1041W | c.3121C>T | Moderate | 0.03 | 14 | Missense, ATP loop, N-domain | 3% (2/70) | |
p.H1069Q | c.3207C>A | Severe | 0.00 | 14 | Missense, ATP loop, N-domain | No/reduced rescue ΔCcc2 yeast. Extensive mislocalization | 18% (12/70) |
p.G1158Vb | c.3473G>T | Moderate | 0.03 | 16 | Missense, ATP loop, N-domain | 1% (1/70) | |
p.M1169T | c.3506T>C | Moderate | 0.01 | 16 | Missense, ATP loop, N-domain | 3% (2/70) | |
p.T1220M | c.3659C>T | Severe | 0.00 | 17 | Missense, ATP binding P-domain | 6% (4/70) | |
p.G1266R | c.3796G>A | Severe | 0.00 | 18 | Missense, ATP hinge, P-domain | 6% (4/70) | |
p.N1270S | c.3620A>G | Severe | 0.00 | 18 | Missense, ATP hinge, P-domain | Reduced ATP hydrolysis activity | 3% (2/70) |
p.P1273 L | c.3818C>T | Severe | 0.00 | 18 | Missense, ATP hinge, P-domain | 3% (3/70) | |
p.L1304Fb | c.3912G>T | Severe | 0.00 | 19 | Missense, between ATP hinge and TM7 | 3% (2/70) | |
p.G1341D | c.4022G>A | Severe | 0.02 | 20 | Missense, TM7 | 1% (1/70) | |
p.Q1351X | c.4051C>T | Moderate | 0.00 | 20 | Non-sense, loop between TM7-TM8 | 1% (1/70) | |
p.S1363F | c.4088C>T | Severe | 0.00 | 20 | Missense, TM 8 | 6% (4/70) | |
IVS20-2A>Gb | c.4022-2A>G | Moderate | — | Intron 20 | Splice-site, skipping of exon 21 | 1% (1/70) | |
Ex20-21del | c.4022-?_4398+?del | Severe | — | 20-21 | TM8, C-ter | 3% (2/70) |
Nucleotide numbering refers to the cDNA numbering, where +1 is the A of the ATG translation initiation codon in the reference sequence. Codon 1 is the initiation codon, ATG.
New mutations in bold letters, reported for the first time in this study.
Severe, age of onset<20 years; moderate, age of onset>20 years.
SIFT: predicts whether a substitution can be tolerated or not: >0.05 tolerated; <0.05 affect protein function.
Reviewed in de Bie et al.36