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. Author manuscript; available in PMC: 2012 Sep 29.
Published in final edited form as: J Phys Chem B. 2011 Aug 31;115(38):11215–11229. doi: 10.1021/jp203695t

Table 5.

Hydrogen bond occupancies for all the model glycopeptides systems from HREX simulations. The occupancies are classified into intra-protein, intra-sugar and sugar-peptide hydrogen bonds.

Comp Protein Sugar Sugar-Peptidea

O..HN O4..HO3 O5..HO6 O2..HO3 O1..HN O1..HNT Osug..HN HO6..O O5..HNT HO2..O1
1 0.037 0.143 0.036 --- 0.178 0.020 0.002 --- --- ---
2 --- 0.133 0.045 --- 0.190 --- 0.001 --- --- ---
3 0.103 0.136 0.034 --- 0.133 0.031 --- 0.022 0.034 ---
4 --- 0.148 0.079 --- 0.237 0.014 0.052 0.093 0.004 ---
5 0.133 0.020 0.102 0.039 0.120 0.052 --- 0.055 0.072 ---
6 --- 0.022 0.207 0.038 0.228 0.029 --- 0.240 0.018 ---
7 0.120 0.018 0.092 --- 0.060 0.055 0.036 0.011 0.060 ---
8 --- 0.016 0.250 --- 0.284 0.019 0.054 0.331 0.002 ---
9 0.086 0.031 0.110 0.106 0.055 0.025 --- --- --- ---
10 --- 0.030 0.108 0.107 0.166 0.003 --- --- --- ---
11 0.216 0.020 0.089 0.153 0.028 0.126 --- 0.003 0.136 0.060
12 --- 0.019 0.212 0.157 0.227 0.023 --- 0.195 0.016 0.110
13 0.142 0.132 --- 0.036 0.087 0.036 --- --- --- 0.113
14 --- 0.142 --- 0.034 0.227 0.003 --- --- --- 0.127
a

For the sugar-Peptide H-bonds the sugar atom is listed first followed by the peptide atom in the heading.

b

H-bond occupancies > 0.1 are presented in bold letters.