Table 1.
Top differentially expressed genes for 27 males versus 33 females, CEU dataset
| Free | edgeRtrend | baySeq | DESeq | GLM | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX | XIST | 1.73E-11 | chrX | XIST | 1.03E-213 | chr17 | ACTG1 | 94.4 | chrX | XIST | 8.82E-227 | chrX | EIF1AX | 1.34E-14 |
| chrX | PNPLA4 | 5.86E-11 | chr7 | ABP1 | 2.80E-42 | chrX | XIST | 44.58 | chr7 | ABP1 | 3.86E-53 | chrX | PNPLA4 | 5.27E-14 |
| chrX | EIF1AX | 2.36E-10 | chr8 | SULF1 | 7.82E-42 | chr11 | RPS3 | 37.49 | chr2 | RAPH1 | 3.90E-52 | chrX | HDHD1A | 1.30E-11 |
| chrX | NLGN4X | 2.09E-08 | chr2 | RAPH1 | 1.16E-40 | chr22 | RPL3 | 28.82 | chr22 | MIR650 | 9.95E-49 | chrX | RPS4X | 4.27E-11 |
| chrX | RPS4X | 4.22E-08 | chr22 | MIR650 | 1.72E-37 | chr12 | RPLP0 | 26 | chr8 | SULF1 | 8.14E-47 | chrX | KDM6A | 6.57E-09 |
| chrX | HDHD1A | 5.06E-08 | chr20 | EEF1A2 | 9.58E-27 | chr15 | PKM2 | 24.7 | chr11 | NEAT1 | 6.77E-31 | chrX | KDM5C | 3.03E-08 |
| chrX | PRKX | 5.62E-07 | chr12 | HMGA2 | 3.48E-22 | chrX | NLGN4X | 21.27 | chr20 | EEF1A2 | 2.30E-19 | chrX | NLGN4X | 6.60E-08 |
| chrX | KDM6A | 6.38E-07 | chr2 | SCN3A | 1.54E-19 | chr22 | MYH9 | 20.13 | chr12 | HMGA2 | 2.87E-19 | chrX | PRKX | 6.69E-08 |
| chr2 | FAHD2A | 1.19E-06 | chr1 | S100A8 | 6.42E-18 | chr13 | LCP1 | 19.71 | chr14 | IFI27 | 2.26E-18 | chr2 | FAHD2A | 1.78E-07 |
| chrX | CXorf15 | 1.43E-06 | chr18 | DSG1 | 7.40E-18 | chrX | EIF1AX | 18.35 | chr15 | GOLGA8B | 1.82E-17 | chrX | CXorf15 | 2.62E-07 |
BaySeq results are shown as log posterior odds for differential expression.