Table 4.

Complexes considered in the unbound docking experiment, for which GRAMM produced near-native structures, with their PDB and chain identifiers

Recognition by DARS-RNP and QUASI-RNP	Molecule name	Complex PDB code	Receptor PDB code (and its RMSD vs the bound structure)	Ligand PDB code (and its RMSD vs the bound structure)
	Norwalk Virus polymerase with CTP/RNA primer	3bso_a:p	1sh0_b (1.3)	3bso_p (0.0)
Successful	HutP/Hut mRNA	1wpu_a:c	1wpv_a (0.2)	1wpu_c (0.0)
	9-subunit archaeal exosome/RNA	2jea_a, b:c	2je6_a, b (0.4)	2jea_c (0.0)
	SRP 19/7S.S SRP RNA	1lng_a:b	1lng_a (0.0)	1z43_a (2.1)
	Tyrosyl - tRNA synthetase splicing factor/group I intron RNA	2rkj_b:c	1y0q_a (3.0)	1y42_x (0.9)
Unsuccessful	SRP C-termina domain/4.5 S RNA	2pxv_a:b	1cql_a (8.1)	2pxv_a (0.0)
	spliceosomal 15.5 K protein/U4 snRNA fragment	1e7k_a:c	2jnb_a (3.2)	1e7k_c (0.0)
	Synthetic Fab/P4-P6 ribozyme domain	2r8s_l, h:r	1hr2_a (4.3)	2r8s_l, h (0.0)