Table 6. Top 20 overrepresented KEGG pathways from the mRNA-seq data set (based on disease status, P≤0.05 and ≥±2.0 fold change, 708 genes).
Pathway Name | # input genes in pathway | % input genes in pathway | P-value |
Cell cycle | 18 | 2.542 | 2.68×10−8 |
Jak-STAT signaling pathwaya | 12 | 1.695 | 5.37×10−3 |
Pathways in cancera | 20 | 2.825 | 6.06×10−3 |
p53 signaling pathwaya | 7 | 0.989 | 6.99×10−3 |
Cell adhesion molecules (CAMs)a | 10 | 1.412 | 0.0122 |
Renin-angiotensin systema | 3 | 0.424 | 0.0172 |
TGF-beta signaling pathwaya | 7 | 0.989 | 0.0234 |
Regulation of actin cytoskeletona | 13 | 1.836 | 0.0240 |
Complement and coagulation cascadesa | 6 | 0.847 | 0.0261 |
Primary immunodeficiency | 4 | 0.565 | 0.0273 |
Melanomaa | 6 | 0.847 | 0.0295 |
Pancreatic cancer | 6 | 0.847 | 0.0313 |
Focal adhesiona | 12 | 1.695 | 0.0328 |
Gap junction | 7 | 0.989 | 0.0376 |
pathways found in both platforms.