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. 2011 Sep 27;6(9):e25400. doi: 10.1371/journal.pone.0025400

Table 6. Top 20 overrepresented KEGG pathways from the mRNA-seq data set (based on disease status, P≤0.05 and ≥±2.0 fold change, 708 genes).

Pathway Name # input genes in pathway % input genes in pathway P-value
Cell cycle 18 2.542 2.68×10−8
Jak-STAT signaling pathwaya 12 1.695 5.37×10−3
Pathways in cancera 20 2.825 6.06×10−3
p53 signaling pathwaya 7 0.989 6.99×10−3
Cell adhesion molecules (CAMs)a 10 1.412 0.0122
Renin-angiotensin systema 3 0.424 0.0172
TGF-beta signaling pathwaya 7 0.989 0.0234
Regulation of actin cytoskeletona 13 1.836 0.0240
Complement and coagulation cascadesa 6 0.847 0.0261
Primary immunodeficiency 4 0.565 0.0273
Melanomaa 6 0.847 0.0295
Pancreatic cancer 6 0.847 0.0313
Focal adhesiona 12 1.695 0.0328
Gap junction 7 0.989 0.0376
a

pathways found in both platforms.