Table 3. Sites under positive selection in partetratvirus ORF1 and ORF2.
Sequence | Codon position | SLAC | FEL | REL | |||
dN-dS | p-value | dN-dS | p-value | dN-dS | Bayes factor | ||
ORF1 | 675 | 2.993 | 0.308 | 0.548 | 0.071 | −0.569 | 1.0 |
ORF2 | 115 | 3.079 | 0.416 | 0.441 | 0.073 | −0.007 | 90.274 |
208 | 2.399 | 0.436 | 0.310 | 0.081 | 0.129 | 359.477 | |
209 | 1.482 | 0.670 | 0.193 | 0.206 | 0.039 | 93.682 | |
214 | 2.730 | 0.296 | 0.311 | 0.145 | −0.059 | 63.585 | |
216 | 1.820 | 0.444 | 0.190 | 0.140 | 0.138 | 215.139 | |
217 | 3.576 | 0.212 | 0.471 | 0.085 | −0.065 | 61.723 | |
226 | 1.820 | 0.444 | 0.206 | 0.129 | 0.142 | 251.557 | |
250 | 1.820 | 0.444 | 0.197 | 0.239 | −0.076 | 50.127 | |
344 | 2.758 | 0.321 | 0.342 | 0.117 | 0.057 | 134.893 | |
356 | 1.826 | 0.453 | 0.219 | 0.207 | 0.036 | 93.512 | |
358 | 2.691 | 0.309 | 0.335 | 0.137 | −0.075 | 58.670 | |
382 | 5.907 | 0.099 | 1.453 | 0.015 | −0.168 | 38.311 | |
384 | 5.251 | 0.183 | 1.420 | 0.023 | −0.402 | 14.133 |
A p-value of <0.1 is considered to be statistically significant for positive selection analysis by SLAC and FEL. A Bayes factor of >50 is considered statistically significant for positive selection by REL.