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. 2011 Jun 16;77(4):270–285. doi: 10.1159/000328221

Table 1.

List of primers used in the qPCR validation assays

Gene Forward sequence Reverse sequence Amplicon size bp
GAPDH CAAACCGTTGGTGACAGTATTTG GCACTGAGCATAAGGACACATCTAA 69
RHO_57 ATCCCTTTCCTCTCAGGAAAAAA TCAAGTCAGCCCACTACAGAGTTG 95
RHO 60 CCCCGAGGGCATGCA TGTAAGTGGCGAACATGTAGATGA 95
USP-like TGACTCACAGCGCCACATG TGAGAGAAGCCAAAAAAAGC 71
Tr_22897 TGCGCTGGAACGAAGATG GCCCTGAGGTCCGAAGCT 60
PLA2G12B TCTCTCCTCAGCATGTGAAACG AGGGTCTGCAGCCCAGAGT 71
GLUT1 GTCATGTAACCCTGATGAAAAGGA CGCGCCGCAGACTTTCT 60
C2 AGGTGCTCACTGCGCTTACA AAGTGCAACCGCTGTGCAT 70
CXCR1 CCCTGAGCACTGCTTTGTTTT GGTTGACGCAGCTGTGGAA 60
KCNK12 CCACGGTCGCCCACAT ACAATCTGCGGCCCTCAGTA 67
PCYT1B CCTCCGTCCCTGAGCAGAA TGGCGTAGGACAGCATTCG 64

GADPH (glyceraldehyde 3-phosphate dehydrogenase): reference gene used for normalization of the qPCR results. Target genes were RHO_57 (rhodopsin transcript variant ENSGACT-00000003757), RHO_60 (rhodopsin transcript variant ENSGACT00000003760), USP-like (ubiquitin specific protease-like), Tr_22897 (transcript ‘ENSGACT00000022897’), PLA2G12B (phospholipase 2 group XIIB), GLUT1 (glucose transporter 1), C2 (complement precursor), CXCR1 (interleukin-8 receptor alpha), KCNK12 (potassium channel), and PCYT1B (phosphate cytidylyltransferase 1, choline, beta).