Table 2.
List and annotation of the top transcripts differentially expressed in the brain of sticklebacks exposed to predator cues using a p = 0.001 cutoff
| Transcript ID | logFC | Ave. Exprs | p value | Adj. P. Val | Gene name | Gene description |
|---|---|---|---|---|---|---|
| ENSGACT00000003757 | 3.96 | 6.81 | 2.00E-06 | 0.035 | RHO | rhodopsin |
| ENSGACT00000022897 | −1.71 | 8.93 | 1.99E-05 | 0.105 | NA | novel protein |
| ENSGACT00000024046 | 1.28 | 5.88 | 2.14E-05 | 0.105 | PLA2G12B | group XIIB secretory phospholipase A2-like protein |
| ENSGACT00000012440 | 1.47 | 5.65 | 2.38E-05 | 0.105 | HOXC5 | homeobox protein Hox-C5 |
| ENSGACT00000019166 | −1.82 | 7.59 | 3.21E-05 | 0.113 | CXCR1 | interleukin-8 receptor |
| ENSGACT00000003760 | 2.62 | 6.76 | 4.03E-05 | 0.115 | RHO | rhodopsin |
| ENSGACT00000025444 | 2.91 | 7.90 | 4.90E-05 | 0.115 | USP-like | ubiquitin-specific protease-like protein |
| ENSGACT00000003143 | −1.28 | 11.00 | 5.18E-05 | 0.115 | ROPN1L | ropoporin |
| ENSGACT00000019615 | −1.45 | 7.05 | 7.88E-05 | 0.132 | SLC25A28 | mitoferrin-2 (mitochondrial iron transporter 2) |
| ENSGACT00000003415 | 1.06 | 6.61 | 8.40E-05 | 0.132 | PCYT1B | phosphate cytidylyltransferase 1, choline, beta |
| ENSGACT00000016448 | −1.05 | 7.83 | 8.98E-05 | 0.132 | GLUT-1 | glucose transporter 1 |
| ENSGACT00000007884 | −1.16 | 5.22 | 9.01E-05 | 0.132 | C2 | complement C2 precursor (C2b fragment; C2a fragment) |
| ENSGACT00000026313 | −1.26 | 7.90 | 9.73E-05 | 0.132 | C2orf65 | uncharacterized protein C2orf65 |
| ENSGACT00000004329 | −1.44 | 10.22 | 0.00011 | 0.14 | WT1 | Wilm's tumor protein (WT33) |
| ENSGACT00000018879 | 1.17 | 9.61 | 0.00013 | 0.156 | TNS1 | tensin-1 |
| ENSGACT00000008104 | 1.06 | 8.14 | 0.00014 | 0.156 | ST7L | suppressor of tumorigenicity protein 7-like protein |
| ENSGACT00000020055 | 1.06 | 10.44 | 0.0002 | 0.157 | RBMS1 | RNA-binding motif, single-stranded-interacting protein 1 |
| ENSGACT00000018168 | −1.08 | 7.60 | 0.00022 | 0.157 | P2RY11 | P2Y purinoceptor 11 |
| ENSGACT00000019149 | 0.96 | 11.46 | 0.00025 | 0.157 | ANKDD1A | ankyrin repeat and death domain-containing protein 1A |
| ENSGACT00000012630 | −1.78 | 7.00 | 0.00025 | 0.157 | ALX1 | ALX homeobox protein 1 (cartilage homeoprotein 1) |
| ENSGACT00000009578 | −1.23 | 6.95 | 0.00026 | 0.157 | ZFP568 | zinc finger protein 568 |
| ENSGACT00000002994 | 1.18 | 9.16 | 0.00028 | 0.157 | NDRG4 | protein NDRG4 (brain development-related molecule) |
| ENSGACT00000012508 | −1.47 | 7.25 | 0.00035 | 0.157 | CLEC4M | C-type lectin domain family 4 member M |
| ENSGACT00000021759 | 1.39 | 9.09 | 0.00036 | 0.157 | CPLX4 | complexin-4 precursor |
| ENSGACT00000006879 | 0.97 | 8.57 | 0.00036 | 0.157 | AZIN1 | antizyme inhibitor 1 |
| ENSGACT00000002915 | −1.29 | 5.43 | 0.00037 | 0.157 | GAG | putative GAG protein |
| ENSGACT00000011207 | 1.22 | 7.23 | 0.00037 | 0.157 | TLCD2 | TLC domain-containing protein 2 |
| ENSGACT00000015180 | 1.72 | 5.55 | 0.00039 | 0.157 | MAPRE3 | microtubule-associated protein RP/EB family member 3 |
| ENSGACT00000027138 | −0.97 | 5.55 | 0.00039 | 0.157 | FBXO40 | F-box only protein 40 (muscle disease-related protein) |
Annotation of the transcripts based upon genome annotation in ensembl and BLASTX search. The moderated Bayesian statistics generated using the LIMMA package in R are included and the transcripts are ranked based upon their p values.
logFC = log2 of fold change; Ave. Exprs = average expression across all arrays; Adj. P. Val = p value adjusted; NA = information not available.