Table 3.
List of GO BPs overrepresented in a set of genes differentially expressed in the brain of sticklebacks exposed to predator cues at p< 0.01
| GOBPID | p value | Odds ratio | Exp. count | Count | Size | Term |
|---|---|---|---|---|---|---|
| GO:0019882 | 0.0008 | 5.99 | 1.64 | 7 | 21 | antigen processing and presentation |
| GO:0050962 | 0.0009 | 7.13 | 1.26 | 6 | 16 | detection of light stimulus involved in sensory perception |
| GO:0007602 | 0.0014 | 8.48 | 0.94 | 5 | 12 | phototransduction |
| GO:0050877 | 0.0016 | 1.85 | 21.05 | 35 | 270 | neurological system process |
| GO:0048704 | 0.0019 | 5.94 | 1.42 | 6 | 18 | embryonic skeletal system morphogenesis |
| GO:0009584 | 0.0022 | 7.42 | 1.02 | 5 | 13 | detection of visible light |
| GO:0009952 | 0.0027 | 3.97 | 2.52 | 8 | 32 | anterior/posterior pattern formation |
| GO:0009416 | 0.0032 | 3.82 | 2.59 | 8 | 33 | response to light stimulus |
| GO:0009581 | 0.0044 | 4.75 | 1.65 | 6 | 21 | detection of external stimulus |
| GO:0009582 | 0.0044 | 4.75 | 1.65 | 6 | 21 | detection of abiotic stimulus |
| GO:0046460 | 0.0062 | Inf | 0.16 | 2 | 2 | neutral lipid biosynthetic process |
| GO:0046504 | 0.0062 | Inf | 0.16 | 2 | 2 | glycerol ether biosynthetic process |
| GO:0032868 | 0.0081 | 11.80 | 0.47 | 3 | 6 | response to insulin stimulus |
| GO:0009890 | 0.0108 | 1.75 | 15.50 | 25 | 197 | negative regulation of biosynthetic process |
| GO:0045666 | 0.0133 | 8.84 | 0.55 | 3 | 7 | positive regulation of neuron differentiation |
| GO:0006816 | 0.0149 | 2.80 | 3.30 | 8 | 42 | calcium ion transport |
| GO:0032940 | 0.0156 | 3.42 | 2.10 | 6 | 27 | secretion by cell |
| GO:0043405 | 0.0165 | 2.55 | 4.01 | 9 | 51 | regulation of MAP kinase activity |
| GO:0007168 | 0.0176 | 23.54 | 0.24 | 2 | 3 | receptor guanylyl cyclase signaling pathway |
| GO:0021542 | 0.0176 | 23.54 | 0.24 | 2 | 3 | dentate gyms development |
| GO:0050847 | 0.0176 | 23.54 | 0.24 | 2 | 3 | progesterone receptor signaling pathway |
| GO:0015980 | 0.0178 | 23.35 | 0.24 | 2 | 3 | energy derivation by oxidation of organic compounds |
| GO:0007268 | 0.0192 | 1.95 | 8.41 | 15 | 108 | synaptic transmission |
| GO:0045909 | 0.0201 | 7.07 | 0.63 | 3 | 8 | positive regulation of vasodilation |
| GO:0032774 | 0.0242 | 1.38 | 44.39 | 57 | 564 | RNA biosynthetic process |
| GO:0007623 | 0.0255 | 4.30 | 1.18 | 4 | 15 | circadian rhythm |
| GO:0006607 | 0.0284 | 5.89 | 0.71 | 3 | 9 | NLS-bearing substrate import into nucleus |
| GO:0034104 | 0.0284 | 5.89 | 0.71 | 3 | 9 | negative regulation of tissue remodeling |
| GO:0003001 | 0.0298 | 3.30 | 1.80 | 5 | 23 | generation of a signal involved in cell-cell signaling |
| GO:0006533 | 0.0333 | 11.77 | 0.31 | 2 | 4 | aspartate catabolic process |
| GO:0009405 | 0.0333 | 11.77 | 0.31 | 2 | 4 | pathogenesis |
| GO:0006334 | 0.0359 | 3.11 | 1.89 | 5 | 24 | nucleosome assembly |
| GO:0015674 | 0.0366 | 1.99 | 6.05 | 11 | 77 | di-, tri-valent inorganic cation transport |
| GO:0045860 | 0.0371 | 1.98 | 6.06 | 11 | 77 | positive regulation of protein kinase activity |
| GO:0051347 | 0.0371 | 1.98 | 6.06 | 11 | 77 | positive regulation of transferase activity |
| GO:0000122 | 0.0377 | 1.91 | 6.83 | 12 | 87 | negative regulation of transcription from RNA polymerase II promoter |
| GO:0008630 | 0.0382 | 5.05 | 0.79 | 3 | 10 | DNA damage response, signal transduction resulting in apoptosis |
| GO:0046530 | 0.0382 | 5.05 | 0.79 | 3 | 10 | photoreceptor cell differentiation |
| GO:0007601 | 0.0388 | 1.85 | 7.62 | 13 | 97 | visual perception |
| GO:0000187 | 0.0414 | 2.97 | 1.96 | 5 | 25 | activation of MAPK activity |
| GO:0002504 | 0.0496 | 4.42 | 0.87 | 3 | 11 | antigen processing and presentation via MHC class II |
GOBPID: GO ID of BP term; p value is the significance of enrichment; Odds ratio is the ratio of odds that a GO term is enriched in the selected category; Exp. count represents the number expected; Count represents the number of transcripts annotated for the related GO term; Size is the number of probe sets overrepresented in the universe (background).