Table 4.
List of GO terms overrepresented in a set of genes differentially expressed in the brain of sticklebacks exposed to predator cues at p < 0.01
| GOCCID | p value | Odds ratio | Exp. count | Count | Size | Term |
|---|---|---|---|---|---|---|
| Cellular component | ||||||
| GO:0042612 | 0.0009 | 9.93 | 0.86 | 5 | 11 | MHC class I protein complex |
| GO:0045211 | 0.0045 | 2.67 | 5.17 | 12 | 66 | postsynaptic membrane |
| GO:0005751 | 0.0061 | Infinity | 0.16 | 2 | 2 | mitochondrial respiratory chain complex IV |
| GO:0042622 | 0.0061 | Infinity | 0.16 | 2 | 2 | photoreceptor outer segment membrane |
| GO:0005625 | 0.0077 | 2.14 | 8.30 | 16 | 106 | soluble fraction |
| GO:0019717 | 0.0086 | 3.48 | 2.43 | 7 | 31 | synaptosome |
| GO:0001917 | 0.0174 | 23.67 | 0.23 | 2 | 3 | photoreceptor inner segment |
| GO:0000159 | 0.0198 | 7.11 | 0.63 | 3 | 8 | protein phosphatase type 2 A complex |
| GO:0042613 | 0.0198 | 7.11 | 0.63 | 3 | 8 | MHC class II protein complex |
| GO:0005834 | 0.0252 | 4.32 | 1.17 | 4 | 15 | heterotrimeric G-protein complex |
| GO:0005640 | 0.0280 | 5.93 | 0.70 | 3 | 9 | nuclear outer membrane |
| GO:0005891 | 0.0316 | 3.96 | 1.25 | 4 | 16 | voltage-gated calcium channel complex |
| GO:0042825 | 0.0330 | 11.83 | 0.31 | 2 | 4 | TAP complex |
| GO:0045202 | 0.0351 | 1.72 | 10.64 | 17 | 136 | synapse |
| GO:0019898 | 0.0377 | 2.45 | 3.21 | 7 | 41 | extrinsic to membrane |
| GO:0034707 | 0.0480 | 2.83 | 2.04 | 5 | 26 | chloride channel complex |
| Molecular functions | ||||||
| GO:0004918 | 0.0063 | Infinity | 0.16 | 2 | 2 | interleukin-8 receptor activity |
| GO:0005546 | 0.0063 | Infinity | 0.16 | 2 | 2 | phosphatidylinositol-4,5-bisphosphate binding |
| GO:0048038 | 0.0063 | Infinity | 0.16 | 2 | 2 | quinone binding |
| GO:0004691 | 0.0082 | 11.72 | 0.48 | 3 | 6 | cAMP-dependent protein kinase activity |
| GO:0004871 | 0.0139 | 1.94 | 9.60 | 17 | 122 | signal transducer activity |
| GO:0015226 | 0.0178 | 23.38 | 0.24 | 2 | 3 | carnitine transporter activity |
| GO:0005388 | 0.0204 | 7.03 | 0.63 | 3 | 8 | calcium-transporting ATPase activity |
| GO:0008601 | 0.0204 | 7.03 | 0.63 | 3 | 8 | protein phosphatase type 2 A regulator activity |
| GO:0008565 | 0.0271 | 2.66 | 3.00 | 7 | 38 | protein transporter activity |
| GO:0022890 | 0.0306 | 3.27 | 1.82 | 5 | 23 | inorganic cation transmembrane transporter activity |
| GO:0003713 | 0.0327 | 1.90 | 7.44 | 13 | 94 | transcription coactivator activity |
| GO:0019905 | 0.0335 | 11.72 | 0.32 | 2 | 4 | syntaxin binding |
| GO:0003711 | 0.0336 | 11.71 | 0.32 | 2 | 4 | transcription elongation regulator activity |
| GO:0004571 | 0.0337 | 11.69 | 0.32 | 2 | 4 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0008131 | 0.0337 | 11.69 | 0.32 | 2 | 4 | amine oxidase activity |
| GO:0004674 | 0.0372 | 1.61 | 13.97 | 21 | 177 | protein serine/threonine kinase activity |
| GO:0005245 | 0.0387 | 5.02 | 0.79 | 3 | 10 | voltage-gated calcium channel activity |
| GO:0004112 | 0.0403 | 3.61 | 1.35 | 4 | 17 | cyclic-nucleotide phosphodiesterase activity |
| GO:0005216 | 0.0485 | 2.51 | 2.70 | 6 | 34 | ion channel activity |
GOCCID: GO ID of the CC term, GOMFID: GO ID of MF term; p value is the significance of enrichment; Odds ratio is the ratio of odds that a GO term is enriched in the selected category; Exp. count represents the number expected; Count represents the number of transcripts annotated for the related GO term; GO term size is the number of probe sets overrepresented in the universe (background).