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. 2011 Sep 28;6(9):e24127. doi: 10.1371/journal.pone.0024127

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Garvin et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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The graph of the inverse (1/) shows sites that are ‘unconstrained’ (have a low value or high 1/ value) in the ND5 protein compared to a random distribution of amino acids at each site in the MSA (5a). The inverse of is shown for visual simplicity. The y-axis is the 1/ and the x-axis is the amino acid position. These could be ‘neutral’ sites or those under positive diversifying selection. The remaining graphs (5b–5h) are the values for each site in the MSA after perturbation for each of the selected sites. Red bars are those sites that are considered significant by TreeSAAP analysis in 15 species of Salmonidae only.

Inline graphic — The graph of the inverse (1/) shows sites that are ‘unconstrained’ (have a low value or high 1/ value) in the ND5 protein compared to a random distribution of amino acids at each site in the MSA (5a). The inverse of is shown for visual simplicity. The y-axis is the 1/ and the x-axis is the amino acid position. These could be ‘neutral’ sites or those under positive diversifying selection. The remaining graphs (5b–5h) are the values for each site in the MSA after perturbation for each of the selected sites. Red bars are those sites that are considered significant by TreeSAAP analysis in 15 species of Salmonidae only.