Table 4. Null and alternative formulations of Branch-site Model A and their parameter estimates for Pacific salmonid mitochondrial sequences.
Model | Site Class | 0 | 1 | 2a | 2b |
Model A (Null) | proportion | 0.955 | 0.016 | 0.029 | <10−3 |
Background | 0.010 | 1.000 | 0.010 | 1.000 | |
foreground | 0.010 | 1.000 | 1.000 | 1.000 | |
Model A (Alternative) | proportion | 0.979 | 0.016 | 0.004 | <10−3 |
background | 0.011 | 1.000 | 0.011 | 1.000 | |
foreground | 0.011 | 1.000 | 225.5 | 225.5 |