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. 2011 Sep 28;6(9):e24127. doi: 10.1371/journal.pone.0024127

Table 4. Null and alternative formulations of Branch-site Model A and their parameter estimates for Pacific salmonid mitochondrial sequences.

Model Site Class 0 1 2a 2b
Model A (Null) proportion 0.955 0.016 0.029 <10−3
Background Inline graphic 0.010 1.000 0.010 1.000
foreground Inline graphic 0.010 1.000 1.000 1.000
Model A (Alternative) proportion 0.979 0.016 0.004 <10−3
background Inline graphic 0.011 1.000 0.011 1.000
foreground Inline graphic 0.011 1.000 225.5 225.5