Table 2. Results of prediction analyses.
Validation cohort | R g f | P g f | R g c | P g c |
---|---|---|---|---|
Lothian Birth Cohort 1921 | 0.098 | 0.014 | 0.133 | 1.3 × 10−3 |
Lothian Birth Cohort 1936 | 0.094 | 1.5 × 10−3 | 0.082 | 4.9 × 10−3 |
Aberdeen Birth Cohort 1936 | 0.067 | 0.11 | 0.049 | 0.16 |
Newcastle | 0.137 | 7.5 × 10−5 | 0.057 | 0.06 |
Manchester | 0.148 | 1.3 × 10−5 | 0.086 | 7.5 × 10−3 |
| ||||
Mean | 0.11 | 0.081 | ||
| ||||
NCNG | 0.076 | 0.028 | 0.092 | 0.009 |
For the CAGES samples each cohort, in turn, was used as the validation cohort and the predictor was generated from a joint analysis of the four remaining cohorts. A joint analysis of the five UK cohorts was used to create the predictor for the NCNG cohort. R is the correlation coefficient between the observed phenotype and the predicted value for each individual based on genetic information. P indicates the statistical significance (one-sided t-test, since the alternative hypothesis is that the predictor is positively correlated with outcome) of the correlation coefficient R.