Table 3. Putative miRNA*s, i.e. fragments complementary to known miRNAs but not reported in the miRBase.
| Expression levels | ||||||
| putative miRNA* sequence | matched to miRNA stem-loop | starting position | putative miRNA* | miRNA | ||
| metastatic | non-metastatic | metastatic | non-metastatic | |||
| CTGTACAACCTTCTAGCTTTCC | hsa-let-7c† | 56 | 4.15 | 1.17 | 2039.08 | 1584.38 |
| TCAATAAATGTCTGTTGAAT | hsa-mir-95 | 15 | 0 | 0.88 | 44.70 | 973.18 |
| TATACAACTTACTACTTTCC | hsa-mir-98 | 81 | 0 | 0.58 | 105.99 | 79.47 |
| CGGGGCCGTAGCACTGTCTGA | hsa-mir-128-1 | 15 | 0.92 | 0 | 42.39 | 5.26 |
| ATGTAGGGATGGAAGCCATGA | hsa-mir-135a-2 | 61 | 1.38 | 1.75 | 379.25 | 588.99 |
| TGGAAACATTTCTGCACAAACT | hsa-mir-147b | 12 | 0 | 1.17 | 1.38 | 0.29 |
| GTCATTTTTGTGATGTTGCAG | hsa-mir-153-2 | 14 | 12.44 | 1.46 | 219.34 | 554.81 |
| AGTGGTTCTTAACAGTTCAACA | hsa-mir-203 | 27 | 0 | 6.14 | 116.12 | 296.54 |
| AGCCCCTGCCCACCGCACACTG | hsa-mir-210 | 28 | 1.38 | 1.17 | 13967.09 | 302.97 |
| GCTCTGACGAGGTTGCACTACT | hsa-mir-301b | 10 | 1.38 | 0.88 | 4.15 | 3.21 |
| GTTCCTGCTGAACTGAGCCAGT | hsa-mir-3074 | 12 | 0 | 0.58 | 0.46 | 0.00 |
| AGGGACTTTTGGGGGCAGATGTG | hsa-mir-365-1 | 16 | 1.38 | 1.17 | 16.59 | 22.50 |
| GCGACGAGCCCCTCGCACAAACC | hsa-mir-375 | 5 | 0 | 0.88 | 6414.45 | 11574.16 |
| TGTGTTGCATGTGTGTATATGT | hsa-mir-466 | 14 | 0.92 | 0 | 0 | 0 |
| CAAAAGCAATCGCGGTTTTTGC | hsa-mir-548e | 15 | 0 | 3.80 | 0.46 | 0 |
| CAAAAACTGCAATTACTTTTGC | hsa-mir-548h-3 | 65 | 0 | 0.58 | 0 | 0 |
| TTTGGTGCATATTTACTTTAGG | hsa-mir-559 | 57 | 2.76 | 0.58 | 0 | 0 |
| ATCAAGGATCTTAAACTTTGCC | hsa-mir-561 | 26 | 3.23 | 1.46 | 0 | 0.88 |
| TCGCGGTTTGTGCCAGATGAC | hsa-mir-579 | 25 | 0.92 | 0 | 0.46 | 2.34 |
| ACAACCCTAGGAGAGGGTGCCATT | hsa-mir-652 | 20 | 0 | 1.17 | 11.06 | 16.65 |
| GGACCTTCCCTGAACCAAGGA | hsa-mir-659 | 23 | 2.76 | 1.17 | 0 | 0 |
| ACCTCCTGTGTGCATGGATT | hsa-mir-660 | 52 | 0 | 1.17 | 32.26 | 68.37 |
| CGGCCCCACGCACCAGGGTAAG | hsa-mir-874 | 10 | 0.92 | 0 | 3.23 | 2.05 |
| CGGGAACGTCGAGACTGGAGC | hsa-mir-1247 | 77 | 0.92 | 0.58 | 0 | 0.29 |
| CTATCTTCTTTGCTCATCCTTG | hsa-mir-1255a | 69 | 0 | 1.17 | 2.76 | 1.75 |
| AGTTGGCATGGCTCAGTCCAAGT | hsa-mir-1269 | 25 | 0 | 5.55 | 9.22 | 7.89 |
| TATATATATATATGTACGTATG | hsa-mir-1277 | 11 | 16.59 | 46.45 | 0 | 2.05 |
| ATCTCACTTTGTTGCCCAGG | hsa-mir-1285-1 | 13 | 0.92 | 0 | 0 | 2.05 |
| CTCTAGCCACAGATGCAGTGAT | hsa-mir-1287 | 55 | 0 | 2.05 | 0.92 | 7.89 |
| GAGTGGGGCTTCGACCCTAACC | hsa-mir-1296 | 59 | 0 | 0.58 | 10.60 | 12.27 |
| CCACCTCCCCTGCAAACGTC | hsa-mir-1306 | 15 | 1.38 | 1.75 | 0 | 0.58 |
| TCGACCGGACCTCGACCGGCTCG | hsa-mir-1307 | 41 | 82.48 | 126.50 | 11.98 | 26.59 |
†
putative let-7c* sequence is not identical to the let-7c* in the miRBase but shows complementarity to let-7c.