Table 3.

GO enrichment analysis of QTLs related to abiotic stress in rice

GO Type	GOSlim ID	GO Name	Number of QTLs
BP	GO:0006950	Response to stress	107
	GO:0009719	Response to endogenous stimulus	96
	GO:0009628	Response to abiotic stimulus	78
	GO:0007165	Signal transductions	75
	GO:0009987	Cellular process	74
	GO:0006350	Transcription	66
	GO:0009058	Biosynthetic process	56
	GO:0006464	Protein modification process	56
CC	GO:0005634	Nucleus	98
	GO:0005737	Cytoplasm	86
	GO:0016020	Membrane	72
	GO:0005739	Mitochondrion	69
	GO:0005886	Plasma membrane	60
	GO:0005783	Endoplasmic reticulum	55
	GO:0009536	Plastid	49
	GO:0005730	Nucleolus	47
MF	GO:0016787	Hydrolase activity	85
	GO:0003824	Catalytic activity	77
	GO:0003700	Transcription factor activity	73
	GO:0003677	DNA binding	68
	GO:0005488	Binding	63
	GO:0000166	Nucleotide binding	59
	GO:0016301	Kinase activity	58
	GO:0005515	Protein binding	58

Only those QTLs having the highest number of GO terms in each category are listed.