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. 2011 Jul 23;39(18):e126. doi: 10.1093/nar/gkr574

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — An analysis of how increasing the permitted relative error, ϵ, affects the outcome of STEME. The STEME algorithm was run from the initializations described in the text for various values of ϵ. (A) The mismatch rate: The fraction of resulting consensus sequences that differed from those when ϵ = 0. (B) The mismatch fraction: The fraction of bases in the resulting consensus sequences that differed from those when ϵ = 0.