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. 2011 Jul 23;39(18):e126. doi: 10.1093/nar/gkr574

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 6. — An analysis of the accuracy of STEME for various values of ϵ relative to MEME. The STEME algorithm was run from from the initializations described in the text for various values of ϵ. (A) The mismatch rate: the fraction of resulting consensus sequences that differed from the results of MEME. (B) The mismatch fraction: the fraction of bases in the resulting consensus sequences that differed from the results of MEME.