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Timings for STEME with search for seeds and complete MEME algorithm
| TF | Base pairs (kb) | W | STEME (s) | MEME (s) | Speed-up |
|---|---|---|---|---|---|
| SRF | 674 | 8 | 792 | 14 760 | 18 |
| ZBTB33 | 1 590 | 8 | 933 | 78 339 | 84 |
| TCF12 | 12 540 | 8 | 2122 | 4 928 532 | 2322 |
| TCF12 | 12 540 | 10 | 27 424 | 5 176 744 | 189 |
| TCF12 | 12 540 | 12 | 379 891 | 4 597 053 | 12 |
The times to run MEME on the TCF12 data set are estimated from partial runs as otherwise they would have taken months to complete.
