Table 1.
List of the downloaded files that were used to construct enhanced knowledge database of RAId.
| Organism | GPM | NIST | ISB |
|---|---|---|---|
| Homo sapiens | human_cmp_20.mgf | NIST_human_IT_v3.0_2009_02_04_7AA.sptxt | ISB_Hs_plasma_20070706_Q0.sptxt |
| Homo sapiens | NIST_human-7-22-2008-qtof.sptxt | ISB_Hs_plasma_20070706_Q1.sptxt | |
| Homo sapiens | ISB_Hs_plasma_20070706_Q2.sptxt | ||
| Homo sapiens | ISB_human_consensus_Q0.sptxt | ||
| Aspergillus fumigatus | afumigatus_cmp_20.mgf | ||
| Arabidopsis | ath1_cmp_20.mgf | ||
| Bos taurus | cow_cmp_20.mgf | NIST_bsa_IT_v3.0_2009-05-06.msp.gz | |
| Caenorhabditis elegans | worm_cmp_20.mgf | ISB_Ce-phospho_20080313.gz | |
| Canis familiaris | dog_cmp_20.mgf | ||
| Cavia porcellus | cavia_cmp_20.mgf | ||
| Danio rerio | fish_cmp_20.mgf | ||
| Drosophila melanogaster | NIST_drosophila_IT_v3.0_2008-07-14.msp.gz | ISB_Dm-phospho_20080313.gz | |
| Equus caballus | horse_cmp_20.mgf | ||
| Escherichia coli | NIST_ecoli_IT_v3.0_2009-05-21.msp.gz | ||
| Felis catus | cat_cmp_20.mgf | ||
| Gallus gallus | chicken_cmp_20.mgf | NIST_chicken_IT_v3.0_2009-04-15.msp.gz | |
| Macaca mulatta | rhesus_cmp_20.mgf | ||
| Mus musculus | mouse_cmp_20.mgf | NIST_mouse_IT_v3.0_2009-04-29.msp.gz | |
| Oryctolagus cuniculus | rabbit_cmp_20.mgf | ||
| Pan troglodytes | chimp_cmp_20.mgf | ||
| Rattus norvegicus | rat_cmp_20.mgf | NIST_rat_IT_v3.0_2009-05-21.msp.gz | |
| Saccharomyces cerevisiae | yeast_cmp_20.mgf | NIST_yeast_IT_v3.0_2009-05-04.msp.gz | ISB_Sc-phospho_20080313.gz |
| Saccharomyces cerevisiae | NIST_yeast_QTOF_v3.0_2009-05-06.msp.gz | ||
| Schizosaccharomyces pombe | spombe_cmp_20.mgf |