Table II. The 12 proteins found to be differentially abundant are listed in this table. The accession number for each protein is listed along with the number of unique peptides assigned to each protein. The overall protein ratios identified by iTRAQ are indicated for each protein. These values are based on the total peptide information obtained for the individual proteins. *2 were isoform-specific. **51 were only assigned to Myosin-3, most were isoform-specific. ***9 were only assigned to Myosin-8, 2 were isoform-specific.

Protein name	Acc. No.	Unique peptides	Average (Lean/T2D)	Std dev. (Lean/T2D)	Average (Obese/T2D)	Std dev. (Obese/T2D)
Adenosine deaminase	P00813	3	1.45	0.46	1.63	0.48
Alcohol dehydrogenase 1B	P00325	13	1.68	0.38	2.46	0.76
Apolipoprotein A-I	P02647	2	1.32	0.02	1.27	0.10
Eukaryotic initiation factor 4A-I	P60842	15	0.72	0.15	0.79	0.13
Fatty acid-binding protein	P05413	6	0.75	0.12	0.93	0.07
Heat shock protein beta-6	O14558	7	1.31	0.23	1.54	0.28
Hemoglobin subunit alpha	P69905	5	1.55	0.47	1.26	0.19
Macrophage-capping protein	P40121	3	1.30	0.05	1.15	0.02
Myosin-2	Q9UKX2	12*	0.84	0.28	0.95	0.35
Myosin-3	P11055	80**	0.76	0.14	0.77	0.16
Myosin-8	P13535	37***	0.76	0.13	0.72	0.15
Tenascin	P24821	13	0.78	0.18	0.60	0.21