Skip to main content
. Author manuscript; available in PMC: 2012 Oct 11.
Published in final edited form as: Biochemistry. 2011 Sep 19;50(40):8733–8755. doi: 10.1021/bi2008245

Table 1.

Oligonucleotide Substrates Used in this Worka

Abbreviation Position
−6 −5 −4 −3 −2 −1 +1 +2 +3 +4 +5
rSA5 C C C U C U A A A A A
−1r,dSA5 dC dC dC dU dC U dA dA dA dA dA
−3m,−1d,rSA5 C C C mU C dU A A A A A
−1d,rSA5 C C C U C dU A A A A A
−1d,rSA C C C U C dU A
−5U,−1d,rSA C U C U C dU A
−1d,rP C C C U C dU
−3m,−1d,rP C C C mU C dU
rP C C C U C U
a

Uppercase letters represent RNA bases; m represents a 2′-methoxy moiety, and d represents a 2′-deoxy substitution.