Table 1.
Functional gene group | GenBank accession no. | Gene | Description of gene product | Change in expression relative to that of LF2000 with indicated treatment |
||
---|---|---|---|---|---|---|
Mock | p14(wt) | p14Δ30 | ||||
IFN-inducible genes | NM_001111 | ADAR | Adenosine deaminase, RNA specific | −1.02 | 2.09 | 1.37 |
NM_001565 | CXCL10 | Chemokine (C-X-C motif) ligand 10 | −3.39 | 12.70 | 1.22 | |
NM_005101 | ISG15 | ISG15 ubiquitin-like modifier | −1.29 | 21.85 | 2.31 | |
NM_002038 | IFI6 | IFN-α-inducible protein 6 | −1.46 | 150.55 | 9.81 | |
NM_005531 | IFI16 | IFN-γ-inducible protein 16 | −1.14 | 2.50 | 1.40 | |
NM_005532 | IFI27 | IFN-α-inducible protein 27 | −1.17 | 114.04 | 6.86 | |
NM_006332 | IFI30 | IFN-γ-inducible protein 30 | −1.12 | 2.15 | −1.08 | |
NM_005533 | IFI35 | IFN-induced protein 35 | −1.04 | 5.76 | 1.41 | |
NM_006417 | IFI44 | IFN-induced protein 44 | −1.04 | 10.52 | 2.28 | |
NM_006820 | IFI44L | IFN-induced protein, 44-like | −1.59 | 151.35 | 9.14 | |
NM_022168 | IFIH1 | IFN-induced protein with helicase C domain 1 | −1.78 | 10.28 | 2.21 | |
NM_001548 | IFIT1 | IFN-induced protein with tetratricopeptide repeats 1 | 1.09 | 60.74 | 6.61 | |
NM_001547 | IFIT2 | IFN-induced protein with tetratricopeptide repeats 2 | −1.03 | 8.62 | 2.18 | |
NM_001549 | IFIT3 | IFN-induced protein with tetratricopeptide repeats 3 | −1.19 | 8.66 | 1.76 | |
NM_003641 | IFITM1 | IFN-induced transmembrane protein 1 (9-27) | −1.03 | 20.31 | 2.64 | |
NM_005373 | MPL | Myeloproliferative leukemia virus oncogene | 2.60 | 4.46 | 4.70 | |
NM_002462 | MX1 | Myxovirus (influenza virus) resistance 1, IFN-inducible protein p78 | 1.87 | 538.21 | 25.21 | |
NM_002534 | OAS1 | 2′,5′-Oligoadenylate synthetase 1, 40/46 kDa | 1.24 | 1178.69 | 41.36 | |
NM_004509 | SP110 | SP110 nuclear body protein | −1.01 | 2.80 | 1.46 | |
IFNs | NM_020124 | IFNK | IFN-κ | 1.24 | 4.53 | 1.81 |
IFN receptors | NM_002187 | IL12B | Interleukin-12B (natural killer cell stimulatory factor 2) | 1.18 | 3.92 | 1.39 |
NM_005373 | MPL | Myeloproliferative leukemia virus oncogene | 2.60 | 4.46 | 4.70 | |
IFN regulatory factors | NM_002460 | IRF4 | IFN regulatory factor 4 | 1.24 | 2.46 | −1.26 |
NM_001572 | IRF7 | IFN regulatory factor 7 | 1.26 | 6.77 | 1.54 |
RT2 Profiler IFN pathway-specific arrays were utilized to investigate RNA expression profiles following treatment with p14. Human fibroblasts were treated with 4 μg of purified p14(wt) or p14Δ30 protein in the presence of LF2000 for 24 h. Genes whose expression was upregulated more than a factor of 2 relative to that of the LF2000 control in an experimental treatment group were identified.