Accessory Table 8.
Annotation of transcribed loci (TL). Based on the overlap with ENSEMBL exons TL are annotated first into “known”, “novel”, and “ambiguous” sets. This first level annotation is followed by a second level annotation. Known TL are annotated as protein coding (“pc”), pseudogene (“pseudo”), non-protein coding (“npc”) or UTR (“utr”) depending on the kind or part of an ENSEMBL gene with which they overlap. Novel TL are classified by their location as gene-associated (“assoc”), “intronic” or “intergenic” TL. The category “assoc” contains TL that extend at least partially within 1kb of either terminal exon of an ENSEMBL gene.
| set | total | known | novel | ambiguous | pc | pseudo | npc | utr | intronic | associated | intergenic |
|---|---|---|---|---|---|---|---|---|---|---|---|
| all | 15009 | 3301 | 8409 | 3299 | 3253 | 5 | 3 | 40 | 915 | 2275 | 5019 |
| unchanged | 12248 | 2565 | 7060 | 2623 | 2525 | 4 | 3 | 33 | 741 | 1902 | 4258 |
| FastDown | 435 | 34 | 343 | 58 | 34 | 0 | 0 | 0 | 90 | 46 | 194 |
| FastUp | 125 | 44 | 34 | 47 | 42 | 0 | 0 | 2 | 1 | 16 | 15 |
| SlowDown | 1112 | 371 | 442 | 299 | 367 | 1 | 0 | 3 | 70 | 120 | 239 |
| SlowUp | 1217 | 318 | 630 | 269 | 314 | 0 | 0 | 4 | 36 | 205 | 372 |