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. 2011 Aug 18;27(20):2866–2872. doi: 10.1093/bioinformatics/btr479

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 3. — Cigarette smoke exposure experiment. (a) Box plots of peptide abundance values observed in LC-MS runs (n=98) for the mouse plasma dataset. The color indicates experimental group membership. (b) The rMd-PAV plot of the LC-MS runs. Those runs identified as outliers sit above the red horizontal line which represents the log₂ (χ_0.9999,5²) critical value (i.e. P≤0.0001). The downward triangles represent outlier runs—red represents all technical replicates from a biological sample, and blue represents individual technical replicates within a sample. (c) The run-by-run (r_ij) correlation plot of the LC-MS runs.