Skip to main content
. 2011 Oct 3;195(1):41–54. doi: 10.1083/jcb.201103117

Table IV.

NBD fluorescence lifetimes in various environmentsa

NBD-labeled speciesb Membranes Probe-PTC separationc NBD location τ1 f1d τ2 f2d χ2 <τ>e
ns ns ns
εNBD-Lysf Solvent 1.2 ± 0.2 0.91 2.8 ± 0.2 0.09 1 1.3 ± 0.2
2TML12K2126g Solvent 2.0 ± 0.1 0.78 8.8 ± 0.3 0.22 3 3.5 ± 0.2
2TML12K2126 20 Tunnel 2.2 ± 0.3 0.52 8.6 ± 0.2 0.48 3 5.3 ± 0.3
2TML12K2126 + 20 Tunnel 1.9 ± 0.3 0.49 8.6 ± 0.2 0.51 6 5.3 ± 0.3
2TML12K2281h + Bilayer 2.8 ± 0.5 0.35 10.0 ± 0.3 0.65 1 7.5 ± 0.4
a

For each RTC, data from three or more independent experiments were combined and analyzed together as described in Materials and methods.

b

NBD is located at residue 108 of 2TML12K2 in these experiments.

c

Probe–PTC separation, nascent chain residues between nascent chain εNBD-Lys and the PTC.

d

Molar fraction.

e

Average lifetime based on molar fractions.

f

This RTC sample was treated with puromycin, EDTA, and RNase to release the nascent chain from the ribosome into the solvent, and then with proteinase K to digest the nascent chains.

g

This RTC sample was treated with puromycin, EDTA, and RNase to release the nascent chain from the ribosome into the solvent.

h

Full-length 2TML12K2 proteins were translated and integrated into the ER membrane. The TMS2 and its NBD probe were located in the nonpolar core of the bilayer after their release from the translocon.