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. Author manuscript; available in PMC: 2011 Oct 6.
Published in final edited form as: Bioinformatics. 2007 Aug 23;23(22):2993–3000. doi: 10.1093/bioinformatics/btm413

Table 1.

Benchmark results of the simulation studies

Recombination rate Option TN TP FN FP SP SE PPV TN A-D score TP A-D score FN A-D score FP A-D score BKP (60) score
LOW BRIP 9635 1359 923 83 0.991 0.596 0.942 0.895 0.653 0.862 0.855 0.480
SB 9725 1301 861 113 0.989 0.602 0.920 0.795 0.596 0.698 0.726 0.467
RIP 9637 1358 924 81 0.992 0.595 0.944 0.896 0.658 0.858 0.926 0.514
HIGH BRIP 7284 2467 2161 88 0.988 0.533 0.966 0.916 0.588 0.879 0.795 0.380
SB 7396 2421 2063 120 0.984 0.540 0.953 0.814 0.537 0.712 0.758 0.371
RIP 7303 2532 2096 69 0.991 0.547 0.973 0.914 0.599 0.882 0.855 0.414