Table 1.
Estimates of Denisovan and Near Oceanian Ancestry from SNP Data
|
Population Information |
pD(X): Denisovan Ancestry as % of New Guinea |
pN(X): Near Oceanian ancestry |
p value for Difference |
|||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Broad Grouping | Detailed | Code | N | Estimated Ancestry | Standard Error in the Estimate | Z Score | Estimated Ancestry | Standard Error in the Estimate | Z Score | pN(X) − pD(X) |
| New Guinea | Highlander | SH | 24 | 100% | 0% | n/a | 100% | 0% | n/a | n/a |
| Australian | all | 10 | 103% | 6% | 17.1 | n/a | n/a | n/a | n/a | |
| Northern Territories | AU1 | 8 | 103% | 6% | 16.6 | n/a | n/a | n/a | n/a | |
| Cell Cultures | AU2 | 2 | 103% | 7% | 14.1 | n/a | n/a | n/a | n/a | |
| Fiji | Fiji | FI | 25 | 56% | 3% | 17.7 | 58% | 1% | 94.6 | 0.38 |
| Nusa Tenggaras | all | 10 | 40% | 3% | 12.8 | 38% | 1% | 54.7 | 0.34 | |
| Alor | AL | 2 | 51% | 6% | 8.3 | 49% | 1% | 35.6 | 0.69 | |
| Flores | FL | 1 | 40% | 8% | 5.0 | 37% | 2% | 19.8 | 0.68 | |
| Roti | RO | 4 | 27% | 4% | 6.4 | 27% | 1% | 29.4 | 0.85 | |
| Timor | TI | 3 | 50% | 5% | 9.8 | 45% | 1% | 41.7 | 0.29 | |
| Philippines | all | 27 | 28% | 3% | 8.2 | 6% | 1% | 10.6 | 3.4 × 10−10 | |
| Mamanwa (N) | MA | 11 | 49% | 5% | 9.2 | 11% | 1% | 11.4 | 1.5 × 10−12 | |
| Manobo | MN | 16 | 13% | 3% | 4.2 | 4% | 1% | 5.7 | 0.0018 | |
| Moluccas | all | 10 | 35% | 4% | 10.1 | 34% | 1% | 46.0 | 0.59 | |
| Hiri | HI | 7 | 35% | 4% | 9.0 | 32% | 1% | 38.4 | 0.36 | |
| Ternate | TE | 3 | 36% | 5% | 7.2 | 38% | 1% | 33.7 | 0.67 | |
| Polynesia | all | PO | 19 | 20% | 4% | 5.1 | 27% | 1% | 34.8 | 0.052 |
| Cook | 2 | 16% | 6% | 2.5 | 24% | 1% | 17.3 | 0.21 | ||
| Futuna | 4 | 28% | 5% | 5.3 | 29% | 1% | 26.9 | 0.87 | ||
| Niue | 1 | 27% | 8% | 3.3 | 30% | 2% | 16.3 | 0.72 | ||
| Samoa | 5 | 13% | 5% | 2.6 | 24% | 1% | 23.3 | 0.024 | ||
| Tokelau | 2 | 22% | 6% | 3.5 | 31% | 1% | 23.8 | 0.14 | ||
| Tonga | 2 | 17% | 7% | 2.5 | 31% | 1% | 22.5 | 0.027 | ||
| Tuvalu | 3 | 21% | 6% | 3.6 | 28% | 1% | 22.8 | 0.28 | ||
| Andamanese | Onge (N) | AN | 10 | 10% | 6% | 1.6 | 3% | 1% | 1.8 | 0.27 |
| Taiwan | all | TA | 12 | 4% | 3% | 1.2 | 1% | 1% | 1.5 | 0.35 |
| Puyuma | 2 | 4% | 6% | 0.6 | 2% | 1% | 1.8 | 0.79 | ||
| Rukai | 2 | 0% | 6% | 0.0 | 2% | 1% | 1.6 | 0.74 | ||
| Paiwan | 2 | 5% | 6% | 0.8 | 3% | 1% | 2.2 | 0.67 | ||
| Atayal | 2 | −5% | 5% | −0.9 | 0% | 1% | 0.3 | 0.34 | ||
| Bunun | 2 | 12% | 6% | 2.1 | −2% | 1% | −1.6 | 0.01 | ||
| Pingpu | 2 | 7% | 6% | 1.2 | 1% | 1% | 1.1 | 0.30 | ||
| Malaysia | all | 18 | 5% | 3% | 1.4 | 0% | 1% | −0.2 | 0.16 | |
| Jehai (N) | JE | 8 | 7% | 5% | 1.4 | 1% | 1% | 0.8 | 0.21 | |
| Temuan | TM | 10 | 3% | 4% | 0.8 | −1% | 1% | −0.9 | 0.32 | |
| Sumatra | All | 17 | 4% | 3% | 1.4 | 0% | 1% | 0.3 | 0.17 | |
| Besemah | BE | 8 | 5% | 3% | 1.5 | 1% | 1% | 0.9 | 0.20 | |
| Semende | SM | 9 | 3% | 4% | 0.9 | 0% | 1% | −0.3 | 0.31 | |
| Borneo | all | 49 | 1% | 2% | 0.6 | 1% | 1% | 1.3 | 0.79 | |
| Bidayuh | BI | 10 | 6% | 4% | 1.7 | 1% | 1% | 1.4 | 0.80 | |
| Barito River | BO | 23 | 0% | 3% | 0.2 | 1% | 1% | 1.7 | 0.18 | |
| Land Dayak | DY | 16 | 0% | 3% | −0.1 | 0% | 1% | 0.2 | 0.94 | |
| India | Dravidian | SI | 12 | −7% | 5% | −1.5 | n/a | n/a | n/a | n/a |
We provide each population's estimated ancestry, the standard error in the estimate, and the Z score for deviation from zero (Z). Negrito populations are marked with (N). The New Guinea highlanders by definition have 100% Denisovan and 100% Near Oceanian ancestry because they are used as a reference population for computations. Results are not provided for Australians and Dravidians for whom the phylogenetic relationships do not allow the estimate (n/a). The last column reports the two-sided p value for a difference based on a block jackknife and a Z test.