Table II.

Recapitulation of Native Matches by PRODA_MATCH

		N = 100; R = 2.5; D = 2.5a
PDB code	Catalytic residues	Number of matches	Rankb	RMSD (Å)c
1c2t	Asn, His, Asp	41	1	0.7
1dqx	Lys, Asp, Lys, Asp	2583	31	1.8
1h2j	Glu, Glu	150	14	3.6
1jcl	Lys, Asp, Lys	62	9	1.8
1ney	Lys, His, Glu	420	2	1.4
1oex	Asp, Asp	65	8	1.1
1p6o	His, Cys, Cys, Glu	12	1	1.7
3vgc	Ser, His, Asp	88	1	1.3
4fua	His, His, His	176	1	1.1
6cpa	His, Glu, His, Glu	685	66	1.2

The catalytic geometry parameters are obtained from Ref.16.

^aAll parameters are set to the optimal values.

^bRank of native match.

^cRMSD of the TS and the catalytic residues.