Table 2.
Chromosomal position of Sox2 and Sox14 genes in different vertebrate species and their nucleotide similarity level compared to O. niloticus. Chr, chromosome position; S On, Similarity to O. niloticus; AN, Accession number; NA, sequences for Sox genes are not available; NM, sequences of Sox genes are available but it was not possible to identify the genomic position. Species with linkage of Sox2 and Sox14 are highlighted in yellow, species in which Sox2 and Sox14 are unlinked are highlighted in blue, and the species with the linkage data not yet determined for Sox2 and Sox14 are highlighted in red.
| Major group/Species | Sox2 | Sox14 | ||||
|---|---|---|---|---|---|---|
| Chr | S On | AN | Chr | S On | AN | |
| Mammals | ||||||
| Homo sapiens * | 3 | 81% | NG_009080 | 3 | 79% | NM_004189 |
| Pan troglodytes * | 3 | 83% | XM_516895 | 3 | 79% | XM_526317 |
| Gorilla gorilla | 3 | ENSFM0050000027095 1 |
3 | ENSGGOG000000138 78 |
||
| Pongo abelii | 3 | 82% | XM_002814321 | 3 | 79% | XM_002814084 |
| Callithrix jacchus | 15 | 82% | XM_002807565 | 1 | 83% | XM_002742479 |
| Macaca mulatta * | 2 | 81% | NM_001142940 | 2 | 80% | NM_001194657 |
| Canis familiaris * | 34 | 82% | XM_545216 | 23 | ENSCAFG0000000986 7 |
|
| Bos taurus * | 1 | 81% | NM_001105463 | 1 | 78% | NM_001163781 |
| Equus cabalus * | 19 | 80% | NM_001143799 | 16 | 80% | XM_001916428 |
| Ornithorhynchus anatinus * | 1 | 81% | XM_001506934 | 1 | AY112710 | |
| Sus scrofa | 13 | 82% | EU503117 | 13 | ENSSSCG0000001165 6 |
|
| Oryctolagus cuniculus | 14 | 82% | XM_002716451 | 14 | ENSOCUG000000016 86 |
|
| Loxodonta africana | NM | ENSLAFG0000000636 2 |
NM | ENSLAFG0000000344 7 |
||
| Rattus norvegicus * | 2 | 81% | NM_001109181 | 8 | NW047801.1 | |
| Mus musculus * | 3 | 81% | NM_011443 | 9 | 78% | NM_011440 |
| Monodelphis domestica * | 7 | 85% | XM_001368783 | 4 | ENSMODG000000249 83 |
|
| Cavia porcellus | NM | ENSCPOG0000000357 5 |
NM | ENSCPOG0000002627 2 |
||
| Echinops telfairi | NM | ENSETEG0000000512 2 |
NM | ENSETEG0000001857 6 |
||
| Birds | ||||||
| Gallus gallus * | 9 | 79% | D50603 | 9 | ENSGALG000000173 72 |
|
| Amphibians | ||||||
| Xenophus tropicalis | NM | 86% | BC159121 | NM | ENSXETG0000002268 9 |
|
| Fish | ||||||
| Danio rerio * | 22 | 82% | AB242329 | 6 | ENSDARG000000709 29 |
|
| Oryzias latipes | 4 | 93% | FJ895588 | NM | 91% | NM_001164872 |
| Tetraodon nigroviridis | 1 | ENSTNIG00000008596 | NM | 100% | AY612092 | |
| Gasterosteus aculeatus | 8 | ENSGACG0000002011 1 |
NA | NA | ||
*
Species whose Sox2 and Sox14 linkage was previously checked/revised in Popovic and Stevanovic 2009.