Table 2.
Fourteen of the most often positively selected residues of the Rubisco large subunit
| Residue no1 | Fitmode2 | PAML3 | Location of residues | Residues within 9 Å4 | Coevolving residue no |
Interactions |
|---|---|---|---|---|---|---|
| 449 | 26 | 5 | Helix G | 374, 375, 376, 396, 399, 400, 401, 402, 407, 410, 411, 445, 446, 447, 448, 449,451, 452, 453, 454 | 128, 147 | ID, SSU, DD |
| 225 | 20 | 7 | Helix 2 | 154, 155, 184, 187, 189, 219, 220, 221, 223, 224, 226, 227 | None | DD, SSU, ID |
| 251 | 20 | 4 | Helix 3 | 209, 210, 213, 217,247, 248, 249, 250, 252, 253 | 258, 261* | DD, ID, SSU |
| 145 | 16 | 7 | Helix D | 142**, 143, 144, 146, 147, 148, 149, 150, 281, 282, 314, 315, 316, 364, 365, 366 | 142**, 240 | DD |
| 142 | 14 | 4 | Helix D | 140,141, 143, 144, 145, 272, 276, 311, 312, 313, 314, 315, 364, 365 | 255**, 240 | DD |
| 95 | 13 | 4 | 23, 25, 26, 27, 54, 70, 71, 72, 73, 74, 93, 94, 96. 97. 98. 99 | 23, 86**, 326*, 332 | SSU, ID | |
| 439 | 12 | 2 | Helix G | 413, 414, 417, 435, 436, 437, 438, 440, 441, 442, 443, 444, 446, 447 | 33*, 152, 151, 153, 135*, 281*, 310*, 440*, 470* | ID |
| 219 | 11 | 4 | Helix 2 | 180, 181, 182, 184, 185, 186, 215, 216, 217, 218, 220, 221, 222, 223, 224, 225,227 | 121, 388, 423 | DD, SSU, ID |
| 279 | 11 | 1 | Helix 4 | 143, 144, 152, 249, 253, 254, 274, 285, 286, 277, 278, 280, 281 | 301, 346 | DD |
| 328 | 11 | 3 | Loop 6 | 319, 320, 321, 322, 323, 324, 326, 327, 329, 330, 332, 333, 462, 464 | 228*, 281* | AS, ID |
| 375 | 11 | 9 | Strand 7 | 373, 374, 376, 377, 378, 379, 393, 396, 410, 411, 414, 436, 446, 449, 450, 453 | 395, 419* | AS, ID, SSU |
| 255 | 9 | 6 | Helix 3 | 190, 228, 229, 230, 231, 248, 253, 254, 256, 257, 280, 281, 282, 283, 315, 316 | 101, 86**, 167, 149*, 169*, 256*, 320*, 371*, 398 | SSU |
| 28 | 8 | 9 | N-terminus | 26, 27, 29, 30, 76, 91, 94, 128, 129, 130, 131, 132 | 19, 355*, 93* | SSU, ID |
| 86 | 8 | 9 | Strand C | 33, 34, 35, 36, 37, 39, 41, 81, 84, 85, 87, 88 | 149*, 256*, 167, 169*, 222*, 317*, 320*, 371*, 398, 23, 30* | DD |
1 The residue number is according to the spinach Rubisco sequence (8RUC)
2 Number of groups with detected positively selected residues in Fitmodel
3 Number of groups with detected positively selected residues in PAML
4 *positively selected site; ** most often positively selected site; underlined residues are both within 9 Å and coevolve