TABLE 3.
Number of compounds predicted active by the virtual screening of libraries
A compound is tagged active if its docked pose matches the three following criteria: (pki docking score) ≥5 and (distance between compound positive charge and Glu-283 carboxylate) ≤5.5 Å and (number of inter-molecular π-π interaction) ≥3.
Libraries |
CCR5 models |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|
Name | Potency | Sizea | CCR5_Rho | CCR5_Ops | CCR5_AdrB2 | CCR5_AA2a | CCR5_mix | CCR5_CXCR4_peptide | CCR5_CXCR4_small |
|
A chain | B chain | |||||||||
MVC-like | nm | 9 (11) | 6 (6) | 0 (0) | 0 (0) | 1 (1) | 8 (10) | 6 (6) | 0 (0) | 0 (0) |
DIVERSE-active | nm | 17 (19) | 3 (3) | 1 (1) | 2 (2) | 1 (1) | 11 (11) | 6 (6) | 0 (0) | 1 (1) |
FOCUS-inactive | Inactiveb | 87 (178) | 6 (8) | 1 (1) | 5 (7) | 3 (3) | 12 (19) | 0 (0) | 1 (1) | 4 (4) |
ChemoR-decoys | Unknown | 67 (117) | 12 (16) | 1 (1) | 13 (17) | 5 (6) | 25 (36) | 5 (8) | 2 (2) | 8 (10) |
a Total number of compounds of the library. The total number of isomers is given in parentheses.
b No activity was reported for compounds at 500 μm in competition binding assays as described previously (45).