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. 2011 Jul 29;286(38):33322–33334. doi: 10.1074/jbc.M111.263681

TABLE 1.

Numbers of occupied mouse DR5 RAREs in the initial list (15,925 predicted sites), the list of conserved 181 sites located ±10 kb from TSSs, and in the final list of 138 RAREs

For finding significant occupied sites, a cutoff p value of 0,00001 was applied. As a control, the same strategy was applied to a random list of 15,925 sequences of 17 kb.

F9 cells RAREs
Random list Predicted (159,25) Conserved (181) Final list (138)
Untreated 32 (0.2%) 691 (4%) 48 (26%) 39 (28%)
RA 2 h 62 1,109 49 45
RA 24 h 39 964 46 33
RA 48 h 85 1,523 (9%) 71 55
Total 112 1,791 (11%) 76 (42%) 58 (42%)