Table 1. Genotypes for core samples analysed in the study.

				GPI		COII-ND1	MLMT (19 loci)	MLMT (28 loci)
				Haplotype code(s)
Strain	DTU	Location	Host/Vector	Allele 1	Allele 2	Haplotype code	MLG code	MLG code
Tu18 cl2	TcII	Tupiza, BO	Triatoma infestans	Hap nG-21	Hap nG-22	Hap kCN-26	19/B01	28/B01
Rita cl5	TcII	Bahia, BR	Homo sapiens	Hap nG-21		Hap kCN-27	19/B02	28/B02
CBB cl2	TcII	Region IV, CL	Homo sapiens	Hap nG-21	Hap nG-22	Hap kCN-27	19/B03	28/B03
Pot7a cl1	TcII	Boqueron, PY	Triatoma infestans	Hap nG-21		Hap kCN-27	19/B04	28/B04
Pot7b cl5	TcII	Boqueron, PY	Triatoma infestans	Hap nG-21		Hap kCN-27	19/B04	28/B04
IVV cl4	TcII	Cuncumen, CL	Homo sapiens	Hap nG-21	Hap nG-22	Hap kCN-26	19/B05	28/B05
Chaco23 col4	TcII	Pr.Hayes, PY	Triatoma infestans	Hap nG-21	Hap nG-22	Hap kCN-25	19/B06	28/B06
Esm cl3	TcII	Bahia, BR	Homo sapiens	Hap nG-21		Hap kCN-27	19/B04	28/B04
T665 cl1	TcII	Pr.Hayes, PY	Triatoma infestans	Hap nG-22		Hap kCN-28	19/B07	28/B07
ARMA13 cl1	TcIII	Boqueron, PY	Dasypus novemcinctus	Hap nG-14		Hap kCN-15	19/C01	28/C01
JA2 cl2	TcIII	Amazonas, BR	Monodelphis sp.	Hap nG-15		Hap kCN-14	19/C02	28/C02
SABP19 cl1	TcIII	Vitor, PE	Triatoma infestans	Hap nG-16	Hap nG-17	Hap kCN-22	19/C03	28/C03
ARMA18 cl3	TcIII	Boqueron, PY	Dasypus novemcinctus	Hap nG-14	Hap nG-18	Hap kCN-13	19/C04	28/C04
CM25 cl2	TcIII	Carimaga, CO	Dasyprocta fugilinosa	Hap nG-15	Hap nG-19	Hap kCN-13	19/C05	28/C05
M5631 cl5	TcIII	Para, BR	Dasypus novemcinctus	Hap nG-15	Hap nG-20	Hap kCN-18	19/C06	28/C06
M6241 cl6	TcIII	Para, BR	Homo sapiens	Hap nG-15	Hap nG-20	Hap kCN-17	19/C07	28/C07
85/847 cl2	TcIII	Alto Beni, BO	Dasypus novemcinctus	Hap nG-15		Hap kCN-11	19/C08	28/C08
X9/3	TcIII	Pr. Hayes, PY	Canis familiaris	Hap nG-14		Hap kCN-22	19/C09	28/C09
X109/2	TcIII	Pr.Hayes, PY	Canis familiaris	Hap nG-16		Hap kCN-22	19/C10	28/C10
Sc43 cl1	TcV	Santa Cruz, BO	Triatoma infestans	Hap nG-22	Hap nG-23	Hap kCN-19	19/D01	28/D01
Para6 cl4	TcV	Paraguari, PY	Triatoma infestans	Hap nG-22	Hap nG-23	Hap kCN-20	19/D01	28/D01
92-80 cl2	TcV	Santa Cruz, BO	Homo sapiens	Hap nG-22	Hap nG-23	Hap kCN-21	19/D01	28/D01
Para4 cl3	TcV	Paraguari, PY	Triatoma infestans	Hap nG-22	Hap nG-23	Hap kCN-20	19/D01	28/D01
Chaco2 cl3	TcV	Boqueron, PY	Triatoma infestans	Hap nG-22	Hap nG-23	Hap kCN-20	19/D01	28/D01
PAH179 cl5	TcV	Chaco, AR	Homo sapiens	Hap nG-22	Hap nG-23	Hap kCN-20	19/D02	28/D02
Vinch101 cl1	TcV	Limari, CL	Triatoma infestans	Hap nG-22	Hap nG-23	Hap kCN-20	19/D01	28/D01
Bug2148 cl1	TcV	Rio Gr. do Sul, BR	Triatoma infestans	Hap nG-22	Hap nG-23	Hap kCN-20	19/D01	28/D01
CL Brener	TcVI	Rio Gr. do Sul, BR	Triatoma infestans	Hap nG-22	Hap nG-14	Hap kCN-24	19/E01	28/E01
VFRA1 cl1	TcVI	Francia, CL	Triatoma infestans	Hap nG-22	Hap nG-14	Hap kCN-24	19/E01	28/E01
Chaco17 col1	TcVI	Pr. Hayes, PY	Triatoma infestans	Hap nG-22	Hap nG-14	Hap kCN-24	19/E01	28/E01
Tula cl2	TcVI	Tulahuen, CL	Homo sapiens	Hap nG-22	Hap nG-14	Hap kCN-24	19/E02	28/E02
P251 cl7	TcVI	Cochabamba, BO	Homo sapiens	Hap nG-22	Hap nG-14	Hap kCN-24	19/E03	28/E03
LHVA cl4	TcVI	Chaco, AR	Triatoma infestans	Hap nG-22	Hap nG-14	Hap kCN-24	19/E01	28/E01
EPV20-1 cl1	TcVI	Chaco, AR	Triatoma infestans	Hap nG-22	Hap nG-14	Hap kCN-24	19/E02	28/E02
Chaco9 col15	TcVI	Pr. Hayes, PY	Triatoma infestans	Hap nG-22	Hap nG-14	Hap kCN-23	19/E01	28/E01

DTU, discrete typing unit; MLMT, multi-locus microsatellite typing; MLG, multi-locus genotype; Hap, Haplotype; BO, Bolivia; BR, Brazil; CL, Chile; PY, Paraguay; PE, Peru; CO, Colombia; AR, Argentina.