Table 2. Molecular clock likelihood ratio tests.
Locus | Haplotypes (n) | Outgroup | Model | Clock? | Log Ln | 2*ΔLn (D) | Δdf | χ2 p value |
GPI | 39 | Unrooted | GTR+G4 | No | −3236.663433 | |||
GPI | 39 | T. brucei | GTR+G4 | Yes | −3251.047356 | 28.76785 | 37 | 0.831 |
COII-ND1 | 40 | Unrooted | TN93+G4 | No | −3151.651149 | |||
COII-ND1 | 40 | T. cruzi marinkellei | TN93+G4 | Yes | −3179.461322 | 55.62035 | 38 | 0.032 |