Table 3.
The variable sites alignment of gdh gene fragment of G.duodenalis in 22 isolates of assemblage B.
| 2333333334 | 4445555555 | 55556666 | |
|---|---|---|---|
| Isolates/clones | 7034568992 | 3450014566 | 67790122 |
| 4990707169 | 6761790814 | 70676247 | |
| ATCC50581 | CTGACGCGTC | TCGCCCTGTG | CCGCCAAG |
| HT105 | .......... | ........C. | ........ |
| HT123C1 | .......... | ........C. | ...T.... |
| HT123C10 | ....T..... | ......C.C. | .....G.. |
| HT123C2 | ....T..... | ........C. | ...T.... |
| HT123C4 | ....T..... | ........C. | .T.T.... |
| HT123C7 | .......... | ........C. | .T.T.... |
| HT140 | ......T... | ........C. | ........ |
| HT142 | .......... | .......... | ........ |
| HT187C1 | .......... | .T.....AC. | ........ |
| HT187C2 | .......... | ........C. | ........ |
| HT187C3 | ....T..... | .T.....AC. | .....G.. |
| HT187C4 | ....T..... | .......... | ....T..A |
| HT187C5 | ....T..... | ....T..... | ....T..A |
| HT187C6 | ....T..... | .T.....AC. | ....T..A |
| HT187C8 | ....T..... | ........C. | ........ |
| HT193C1 | ....T..... | .......... | ..A..... |
| HT193C2 | .......... | .......... | ..A..... |
| HT193C8 | ....T..... | ....T..... | ....T..A |
| HT193C9 | .......... | ......C.C. | .....G.. |
| HT57C1 | .......... | .......... | ........ |
| HT57C2 | .......... | ..A.....C. | .T...... |
| HT57C3 | .......... | ........C. | .T...... |
| HT57C5 | ...G...... | G......... | ........ |
| HT57C8 | .......... | G......... | ........ |
| Or172C1 | .C..T....T | .T...TC.C. | .....G.. |
| Or172C2 | .........T | ........C. | ....T... |
| Or172C3 | G..G...... | .T...TC.C. | .....G.. |
| Or172C4 | ....T..... | ........C. | ........ |
| Or172C5 | ........C. | ........C. | .....G.. |
| Or172C6 | .C..T....T | .T......C. | ........ |
| Or172C7 | .......... | .T...TC.C. | .....G.. |
| Or172C8 | .........T | .T...TC.C. | .....G.. |
| Or176C1 | .......... | ........C. | ........ |
| Or176C2 | .......... | ........C. | ....T... |
| Or176C9 | ........C. | ........C. | ....T... |
| Or284 | ....T..... | .......... | ....T... |
| Pre016 | .......... | ........C. | ........ |
| Pre1117 | .C..T....T | .....TC.CA | .....G.. |
| Pre1402C1 | .......... | .......... | ....T..A |
| Pre1402C2 | ....T..... | ........C. | ....T..A |
| Pre1402C4 | .......A.. | ....T...C. | .......A |
| Pre1402C5 | .......... | ........C. | ........ |
| Pre1402C6 | .......A.. | ........C. | ........ |
| Pre1402C7 | ....T..A.. | .......AC. | ........ |
| Pre1402C8 | ....T..... | ........C. | ....T... |
| Pre1402C9 | ....T..A.. | ....T...C. | ....T... |
| Pre2018 | .......... | ........C. | ........ |
| Pre2103C1 | .......... | ..A.....C. | ........ |
| Pre2103C2 | .......... | ..A.....C. | T....... |
| Pre2103C3 | .......... | ........C. | ........ |
| Pre2103C5 | .......... | ........C. | T....... |
| Pre2320 | ....T..... | ....T..... | ....T..A |
| Pre2403C1 | .......... | .....TC.C. | ...T..G. |
| Pre2403C10 | .........T | .....T..C. | .T..T... |
| Pre2403C2 | G......... | ...T....C. | ........ |
| Pre2403C3 | .C...A.... | ........C. | ....T... |
| Pre2403C4 | ..A..A.... | ........C. | .T..T... |
| Pre2403C5 | .........T | ........C. | .T..T... |
| Pre2403C6 | .......... | ...T....C. | .T...... |
| Pre2403C7 | ..A..A...T | .....TC.C. | ...T..G. |
| Pre2403C8 | .........T | .....TC.C. | ...T..G. |
| Pre3207 | .......... | ........C. | ......G. |
| TSH090 | .......... | ..A.....C. | ........ |
| TSH1119 | .......... | ..A.....C. | ........ |
| TSH1210 | .......... | ........C. | ...T.... |
| TSH1250 | .......... | ........C. | ........ |
| Amino Acid | LLKNLPDDPF | STQGGIYEFT | GVTGFRTG |
| .......... | V..D...N.. | A......... | ........ |
Dots are identical sites. Numbers indicate nucleotide positions from start codon.